SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G06510 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase superfamily protein | chr3:2016450-2019533 FORWARD LENGTH=622 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009707 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0008422 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-glucosidase activity | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| GO:0080079 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cellobiose glucosidase activity | SoyBase | N/A | ISS |
| KOG0626 | KOG | Beta-glucosidase, lactase phlorizinhydrolase, and related proteins | JGI | ISS | |
| PTHR10353 | Panther | GLYCOSIDE HYDROLASES | JGI | ISS | |
| PF00232 | PFAM | Glycosyl hydrolase family 1 | JGI | ISS | |
| UniRef100_Q1M320 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative beta-glycosidase n=1 Tax=Glycine max RepID=Q1M320_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8L6H7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-glucosidase-like SFR2, chloroplastic n=2 Tax=Oryza sativa Japonica Group RepID=SFR2_ORYSJ | SoyBase | E_val: 0 | ISS |
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Glyma17g04130 not represented in the dataset |
Glyma17g04130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g36470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g037100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g04130.1 sequence type=CDS gene model=Glyma17g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGGTGGTCGGACTCTTCCTCACTGCCACGAAGCTCGCCGGAGCTCTATTCACTCTCACCGTCGCCGCCAACGCCTTCTCCTACTCCCGCTTTCGCAAGAAGAACCTTCGCGGTTTCCGCTCTCCCATCGATGAATCCCAAGACACTCTCGCACACTTTAACGTCGCTGAAGGGGAAGATGGGTTTTTCTTTGGTTTGGCGACAGCGCCAGCACATGTTGAGGACAGGCTTGATGATGCTTGGATCCAGTTTGCTGAGAAAAAGAGTGGTGAAGGTGGTGGTGACTCTGAGGGGAAGCAGAGAGTGGATGCTGTGATTGGTTCTGCTTCTGGCGATGGTGGTTCCCAGCCGGCCATAACATCTCCGAGGAGCAGGAAGCCTCTCAAGGTGGCGATGGAGGCCATGATCAGGGGAATTGAGAAGTATATGGAAGTGGAAGGGAAAGAAAGAGAAGAAGAAGCCCGTCCTAATGTAACTGCTTGGCATAATGTTCCATGCCCGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGAAACAGAAATAAAGTTGGCCAAGGATACTGGTGTTACAGTTTTTCGCATGGGAATAGATTGGACAAGAATCATGCCAGTGGAGCCAGTAAGCAGCCTTAATCAATCTGTTAACTATGCTGCATTGGAACGGTATAAGTGGATTATCAATAGGGTTCGATCGTATGGAATGAAAGTGATGCTCACTCTTTTTCATCACTCGCTTCCACCCTGGGCTGGTGAGTATGGAGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTAGACAGTGTCTCAGATTTGGTAGACTACTGGGTAACATTTAATGAGCCCCATGTCTTCTGTATGCTTACTTATTGTGCTGGAGCTTGGCCTGGTGGTCATCCTGATATGCTTGAGGCTGCTACTTCTGCACTTCCAACTGGTGTTTTCCAGCAGGCCATGCACTGGATGTCTATTGCACACTCAAAGGCATACGACTACATCCATGGACTAAGTAACCCATTAAATTCAATAGTCGGTGTAGCACACCATGTGTCATTTATGCGACCCTATGGTTTGTTTGATATTGCTGCTGTTTCACTGGCTAATTCATTGACTCTCTTCCCATACATTGATGAAATATCTGAGAAGCTGGACTATATAGGCATAAACTACTATGGGCAGGAAGTGGTTTCAGGTGCAGGCCTGAAGCTGGTGGAAAATGATGAGTACAGTGAATCTGGTCGTGGGGTATACCCTGATGGCTTATACCGCATGCTGCTTCAATACCATGAAAGATACAAACATCTAAATATTCCCTTCATCATTACTGAAAATGGGGTTTCAGATGAGACAGATTTGATTCGCCGGCCATATCTCTTGGAGCATTTGCTTGCTATTTATGCTGCCATGATCATGGGTGTGCGTGTACTTGGTTACCTGTTCTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTTGCGGTTGACCGGGCAAATAATCTTGCACGGACCCCTCGCCCCTCTTACCATCTATTTTCTAAGATTGTGAATACAGGCAAAGTTACACATGAAGATCGTGAAAGAGCATGGGATGAACTTCAAAGAGTTGCAAAAGAGAAGAAAACAAGACCATTTTATCGGGCTGTGGATAAACACCGTTTAATGTATGCAGGTGGACTTGACAAACCTGAACAGCGACCTTATATAGAACGAGATTGGCGGTTTGGTCATTATCAGATGGATGGACTCCAGGATCCCTTGAGCCGCTTCTCAAGATCCATTTTTCGACCATTCTCCCTCTTCTCCCTTAAAAGGAAACCAAAATCTCAAAAGAAGAATGCCAAATTGATTCTCCAGCCTCTTGAAACTTAG
>Glyma17g04130.1 sequence type=predicted peptide gene model=Glyma17g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTVVGLFLTATKLAGALFTLTVAANAFSYSRFRKKNLRGFRSPIDESQDTLAHFNVAEGEDGFFFGLATAPAHVEDRLDDAWIQFAEKKSGEGGGDSEGKQRVDAVIGSASGDGGSQPAITSPRSRKPLKVAMEAMIRGIEKYMEVEGKEREEEARPNVTAWHNVPCPEERLRFWSDPETEIKLAKDTGVTVFRMGIDWTRIMPVEPVSSLNQSVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVDSVSDLVDYWVTFNEPHVFCMLTYCAGAWPGGHPDMLEAATSALPTGVFQQAMHWMSIAHSKAYDYIHGLSNPLNSIVGVAHHVSFMRPYGLFDIAAVSLANSLTLFPYIDEISEKLDYIGINYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQYHERYKHLNIPFIITENGVSDETDLIRRPYLLEHLLAIYAAMIMGVRVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARTPRPSYHLFSKIVNTGKVTHEDRERAWDELQRVAKEKKTRPFYRAVDKHRLMYAGGLDKPEQRPYIERDWRFGHYQMDGLQDPLSRFSRSIFRPFSLFSLKRKPKSQKKNAKLILQPLET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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