Glyma17g04120 - SoyBase

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Report for Sequence Feature Glyma17g04120

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2705222
stop:	2708939
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17180	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 33 \| chr3:5855861-5859157 REVERSE LENGTH=478	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
KOG1282	KOG	Serine carboxypeptidases (lysosomal cathepsin A)	JGI		ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF8	Panther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE D) (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_G3KLG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Grain size 5 n=1 Tax=Oryza sativa Indica Group RepID=G3KLG7_ORYSI	SoyBase	E_val: 0	ISS
UniRef100_I1MRU5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MRU5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g04120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g04120

Paralog	Evidence	Comments
Glyma07g36500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g04120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g037000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g04120

Limit To All Plant Sequences

>Glyma17g04120.1   sequence type=CDS   gene model=Glyma17g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGAAAATGAATGTTATTCTGTGCCTCCAGTTCCTATGTTTCTTTCTTTTAAGTACTTTGTTCATTAAAGCATCTGCAATAAATGTGGAAACATATGAATCTGATAGAATAATTGATCTTCCTGGCCAACCTTCAAGCCCATCAGTCTCACACTTTTCAGGTTACATCACTGTCAATGAAAACCATGGAAGGGCCCTTTTCTACTGGTTCTTTGAAGCTCAATCTGAACCATCCAAGAAGCCTCTCCTTCTCTGGCTCAATGGAGGACCCGGATGCTCCTCTATTGGGTATGGTGGAGTTGTTGAGATTGGACCTCTTATAGTCAACAAAAATGGGGAAGGACTACATTTCAACACACACTCCTGGAATCAAGAAGCAAATTTGTTATTTGTGGAGTCACCTGTGGGAGTTGGATTTTCTTATACTAATACATCTTCTGATCTCACCAAATTAGAGGATAATTTTGTGGCTGAGGATGCCTACATTTTCTTGGTGAATTGGCTACAAAGATTCCCACAGTTCAAATCCCGGGACTTTTTTATATCAGGAGAAAGCTATGGTGGTCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGATCGAAACAAAGATGGGAGCAAATACCCCTTTATTAATCTTAAAGGTTTTATTGTAGGGAACCCAGAAACTGATGATTACTATGACTATAAAGGCCTTCTTGAATATGCATGGAGCCATGCGGTTATATCAGACCAGCAATACGACAAAGCAAAACAAGTATGTGATTTTAAACAATTTGATTGGTCAAATGAATGCAACAAGGCCATGAACGAAGTCTTCCAAGATTACTCAGAAATTGACATATACAACATTTATGCCCCGTCATGTCTTCTAAACAGCACATCCTCAATAGCTGATGATAGCAACGGTAACGGCCCTGAATCATTTACTAAGGAGAGAAATGATTATAGACTAAAGAGGATGAGAATTTTTGGGGGCTATGACCCTTGTTATTCCAATTATGTAGAAGAATACTTCAATAGAAAAGATGTTCAGTCATCTTTTCATGCAGATACTAAAAGAGACACTAACGTAGCATGGAAGGTTTGCAATAATTCCATATTGAGGACTTACAACTTCTCTGTTTTCTCGGTCCTACCTGTCTACACTAAACTCATCAAAGGTGGCCTTAAGATATGGATTTATAGTGGAGACGCAGATGGAAGAGTGCCGGTGATAGGAACACGATATTGCGTTGAGGCTCTGGGATTACCTTTAAAGTCTAGGTGGCGAACTTGGTACCATGATAATCAGGTTGGAGGAAGGATAGTTGAATATGAAGGGTTGACATATGTGACAGTGAGAGGAGCAGGTCACTTGGTGCCACTGAACAAGCCTAGTGAAGCTCTCTCTCTAATTCATTCTTTCTTAACTGGGCAACATCTTCCTACTACTCATGGATAA

Predicted protein sequences of Glyma17g04120

Limit To All Plant Sequences

>Glyma17g04120.1   sequence type=predicted peptide   gene model=Glyma17g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMKMNVILCLQFLCFFLLSTLFIKASAINVETYESDRIIDLPGQPSSPSVSHFSGYITVNENHGRALFYWFFEAQSEPSKKPLLLWLNGGPGCSSIGYGGVVEIGPLIVNKNGEGLHFNTHSWNQEANLLFVESPVGVGFSYTNTSSDLTKLEDNFVAEDAYIFLVNWLQRFPQFKSRDFFISGESYGGHYIPQLAELIFDRNKDGSKYPFINLKGFIVGNPETDDYYDYKGLLEYAWSHAVISDQQYDKAKQVCDFKQFDWSNECNKAMNEVFQDYSEIDIYNIYAPSCLLNSTSSIADDSNGNGPESFTKERNDYRLKRMRIFGGYDPCYSNYVEEYFNRKDVQSSFHADTKRDTNVAWKVCNNSILRTYNFSVFSVLPVYTKLIKGGLKIWIYSGDADGRVPVIGTRYCVEALGLPLKSRWRTWYHDNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPSEALSLIHSFLTGQHLPTTHG*

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