Glyma17g04080 - SoyBase

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Report for Sequence Feature Glyma17g04080

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2689692
stop:	2694725
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49540	AT	Annotation by Michelle Graham. TAIR10: Rab5-interacting family protein \| chr5:20104804-20105609 REVERSE LENGTH=114	SoyBase	E_val: 3.00E-49	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4455	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR20994	Panther	UNCHARACTERIZED	JGI		ISS
PF07019	PFAM	Rab5-interacting protein (Rab5ip)	JGI		ISS
UniRef100_C6SZY0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZY0_SOYBN	SoyBase	E_val: 1.00E-78	ISS
UniRef100_G7IUB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7IUB5_MEDTR	SoyBase	E_val: 2.00E-58	ISS

Expression Patterns of Glyma17g04080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g04080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g036700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g04080

Limit To All Plant Sequences

>Glyma17g04080.4   sequence type=transcript   gene model=Glyma17g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTGACCGCTTATATATACGCACGAATCACAAATCGTAACATTGGCATGAACGATAACACTGAACTAGCTCTCACGTTTGTGCTTGCACTTGCACCTCTCCAACGATAACAACGACGAGCACAAGATCCAGACAAGGCAGGCACATAGTATGGCTGGACCTTTTGAGTTGGGTTCATCAAAGAAGAAACCAGGGGATGGAGTGAATGATTTACTCACTTTTAATGCTGAAAATATGCAAAGCAACATGAAAATTATTTATTACAGCCGAACATTTTTGTCTATAATTGGTGGAGTTGTTGCTGGAATTTTGGGGTTCACAAGCTTGAAAGGATTTGTATTTTACTTCCTTCTCATGATGGTTACTTCACTTGGGCTTGTAGCCAAAGCCAGATTTTCAATCCACTCCTACTTTGACTCCTCGAATCGAGTTCTACTTGATGGCTTCCTAGGTGGTCTAATGTCATTCGTGCTGTTCTGGACATTTGCATTCGACATTGTACATATATTTTGACGGAGGATCGTGCACAAAATGTCTCTAAAGAAGGCAATTGTTGGCTTCTGACTTCTGTTGCTGCTTTAAGAAGGCAATTGTTCTTTATCTTGATTCTTGACATAATGCATGTACTTCATCAAGTTATTGGATAGCTCTCATTATGTTGCCAGTTTTTAAACTTTGTAAGCTCTACTTGCTAATGCTATAAGACCGGTCCTGAAATTTTATGGACCAAACTGAAGCAATTATATTACTTAGTTCTAAATTTTACGGTCACAATGTTTCCAGTTTTTTTTTTTACCAAAAAAAATAGTTTGTTTCATCTGAATTCTGTCAAAAAAATAATGTATAATCTGAATAATGGAATGTGAAAGTAATGTCATCTCTCTTTTTGTGGCTGTCAAGTTGATCTCCAGGAGAATATTCTTGAAGCTTTTTTCTCCAGAGCTTATTATTGAAGATCTTTGTTTTGTAAGATAGAGTGAATTGCTCTTCTAAAAAAAAATATATATGATAGATTGCAATTTACCAAACTTATTTCCAG

Coding sequences of Glyma17g04080

Limit To All Plant Sequences

>Glyma17g04080.3   sequence type=CDS   gene model=Glyma17g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGACCTTTTGAGTTGGGTTCATCAAAGAAGAAACCAGGGGATGGAGTGAATGATTTACTCACTTTTAATGCTGAAAATATGCAAAGCAACATGAAAATTATTTATTACAGCCGAACATTTTTGTCTATAATTGGTGGAGTTGTTGCTGGAATTTTGGGGTTCACAAGCTTGAAAGGATTTGTATTTTACTTCCTTCTCATGATGGTTACTTCACTTGGGCTTGTAGCCAAAGCCAGATTTTCAATCCACTCCTACTTTGACTCCTCGAATCGAGTTCTACTTGATGGCTTCCTAGGTGGTCTAATGTCATTCGTGCTGTTCTGGACATTTGCATTCGACATTGTACATATATTTTGA

>Glyma17g04080.4   sequence type=CDS   gene model=Glyma17g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGACCTTTTGAGTTGGGTTCATCAAAGAAGAAACCAGGGGATGGAGTGAATGATTTACTCACTTTTAATGCTGAAAATATGCAAAGCAACATGAAAATTATTTATTACAGCCGAACATTTTTGTCTATAATTGGTGGAGTTGTTGCTGGAATTTTGGGGTTCACAAGCTTGAAAGGATTTGTATTTTACTTCCTTCTCATGATGGTTACTTCACTTGGGCTTGTAGCCAAAGCCAGATTTTCAATCCACTCCTACTTTGACTCCTCGAATCGAGTTCTACTTGATGGCTTCCTAGGTGGTCTAATGTCATTCGTGCTGTTCTGGACATTTGCATTCGACATTGTACATATATTTTGA

Predicted protein sequences of Glyma17g04080

Limit To All Plant Sequences

>Glyma17g04080.3   sequence type=predicted peptide   gene model=Glyma17g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGPFELGSSKKKPGDGVNDLLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTSLKGFVFYFLLMMVTSLGLVAKARFSIHSYFDSSNRVLLDGFLGGLMSFVLFWTFAFDIVHIF*

>Glyma17g04080.4   sequence type=predicted peptide   gene model=Glyma17g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGPFELGSSKKKPGDGVNDLLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTSLKGFVFYFLLMMVTSLGLVAKARFSIHSYFDSSNRVLLDGFLGGLMSFVLFWTFAFDIVHIF*

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