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Report for Sequence Feature Glyma17g04040

Feature Type:gene_model
Chromosome:Gm17
Start:2670363
stop:2672214
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g04040
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47960AT Annotation by Michelle Graham. TAIR10: cell wall / vacuolar inhibitor of fructosidase 1 | chr1:17681954-17683516 REVERSE LENGTH=205 SoyBaseE_val: 4.00E-39ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0004857GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity SoyBaseN/AISS
GO:0030599GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity SoyBaseN/AISS
GO:0046910GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase inhibitor activity SoyBaseN/AISS
PF04043PFAM Plant invertase/pectin methylesterase inhibitor JGI ISS
UniRef100_C6T0K6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0K6_SOYBN SoyBaseE_val: 1.00E-129ISS
UniRef100_G7JP02UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase inhibitor n=1 Tax=Medicago truncatula RepID=G7JP02_MEDTR SoyBaseE_val: 6.00E-66ISS

Expression Patterns of Glyma17g04040
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g04040 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g036300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g04040
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g04040
>Glyma17g04040.1   sequence type=CDS   gene model=Glyma17g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATTATGGAATCATTAGCTCTTATCTTCTACAGTACTCTTGTTTTAGCTACGATTTCAGTTCCAGCAACTAACTCCAGAATCATCCATCAAAAAAACAATGCCAATCTGATTGAAGAAACTTGCAAGCAGACACCCCATCACGACCTTTGCATCCAATACCTCTCCTCCGACCCTCGCAGCACCGAAGCAGATGTGACAGGGCTGGCACTTATTATGGTCAACGTAATCAAAATCAAAGCAAACAATGCATTGGACAAAATCCACCAACTGCTTCAGAAAAACCCTGAACCTAGTCAAAAGGAACCACTGAGTTCGTGTGCTGCTAGATACAAAGCAATTGTGGAAGCTGACGTGGCACAAGCCGTTGCGTCTCTGCAGAAAGGAGACCCCAAGTTCGCAGAAGATGGTGCCAATGATGCTGCTATTGAGGCCACCACTTGTGAGAACAGCTTCTCTGCTGGGAAATCGCCACTCACCAATCACAACAATGCTATGCACGATGTTGCAACCATAACTGCAGCTATAGTTAGACAATTGCTCTAG
Predicted protein sequences of Glyma17g04040
>Glyma17g04040.1   sequence type=predicted peptide   gene model=Glyma17g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIMESLALIFYSTLVLATISVPATNSRIIHQKNNANLIEETCKQTPHHDLCIQYLSSDPRSTEADVTGLALIMVNVIKIKANNALDKIHQLLQKNPEPSQKEPLSSCAARYKAIVEADVAQAVASLQKGDPKFAEDGANDAAIEATTCENSFSAGKSPLTNHNNAMHDVATITAAIVRQLL*






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