Glyma17g04001 - SoyBase

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Report for Sequence Feature Glyma17g04001

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2658052
stop:	2659127
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04001

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02380	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:477814-478850 FORWARD LENGTH=231	SoyBase	E_val: 7.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MRT4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRT4_SOYBN	SoyBase	E_val: 1.00E-97	ISS
UniRef100_Q9FZ23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T6A9.7 protein n=1 Tax=Arabidopsis thaliana RepID=Q9FZ23_ARATH	SoyBase	E_val: 3.00E-18	ISS

Expression Patterns of Glyma17g04001

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g04001 not represented in the dataset	Glyma17g04001 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g04001

Paralog	Evidence	Comments
Glyma07g36600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g04001 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g035900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04001

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g04001

Limit To All Plant Sequences

>Glyma17g04001.2   sequence type=transcript   gene model=Glyma17g04001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATAATTTAAAATCAACCCTAAATAAAAATAAAATAAAATTGTCCCATTTGATTAAAAAAAAAAAAGCCCCTTTTCTCCTGCTTTTTTGTCCCTCATCGGATCTCGCCTTCTTTCTCTTCCTTTCAAGCAAGGTATCCACTTTTCCGCAATGCCGTCCTCAACCTAGTTTAAAAATTTAAACTTTATGTCTTTCTCCAATTTTCATAAGTGCCCAGGTCAGTCCATTCCTGGGTTCACTTTTTTTATTTTGTGATATCTTTTGTTGAGGAGGTGGATTGAGTTTAAGGATTTAGTTAAGGGAAACACTGTAGAGGAAATAATTTTGCAGGGTAGGTAACAAGAAGGGATAAAAGTTGGATTAGTTTTGTTTTTATCAATTGTGGGTTTGAGATGGATCATAAGAGTGCAAAGGATGAGGATGCTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACTGATTATGAGTCAAAGGATGTCTCTACTCAAGGTAACACAAAACAAGGAAAGATAATACTTACTAAGATTTCTTGTGGGTTTGCTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATGCTGCAAGGAGTCAAAGTTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAATGTCCAGTAATAAGAAGGCTCCCAAACCTCCAAGACCTCCTCGAGCTCCTTCGTGGGATGTAGCTGACCAGAAGCTAATCAGGGAGATCACTGAACTCGCCATGCTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGCTGCTAAGGCATCGTCATCTTCCAGTAGCAGCACGTTTGCTATGGTTTTCACTGTTGTCTTCTGTATTGTCGTATTACTCCAAGGTAATATTCCTTTAATAAAATTAATTCTTATCATCATATGA

Coding sequences of Glyma17g04001

Limit To All Plant Sequences

>Glyma17g04001.1   sequence type=CDS   gene model=Glyma17g04001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCATAAGAGTGCAAAGGATGAGGATGCTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACTGATTATGAGTCAAAGGATGTCTCTACTCAAGGTAACACAAAACAAGGAAAGATAATACTTACTAAGATTTCTTGTGGGTTTGCTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATGCTGCAAGGAGTCAAAGTTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAATGTCCAGTAATAAGAAGGCTCCCAAACCTCCAAGACCTCCTCGAGCTCCTTCGTGGGATGTAGCTGACCAGAAGCTAATCAGGGAGATCACTGAACTCGCCATGCTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGCTGCTAAGGCATCGTCATCTTCCAGTAGCAGCACGTTTGCTATGGTTTTCACTGTTGTCTTCTGTATTGTCGTATTACTCCAAGGTAATATTCCTTTAATAAAATTAATTCTTATCATCATATGA

>Glyma17g04001.2   sequence type=CDS   gene model=Glyma17g04001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCATAAGAGTGCAAAGGATGAGGATGCTGAAGTTGATCTTGAAAGTGGGTTGGTTTTGACTGATTATGAGTCAAAGGATGTCTCTACTCAAGGTAACACAAAACAAGGAAAGATAATACTTACTAAGATTTCTTGTGGGTTTGCTGGAGATTGTATAAAAGGTGAAGATAGGTATAGTGGATGCTGCAAGGAGTCAAAGTTAACTGTAGTTTCAATGGACATGGTGAAAGTGACAAACAAGTTGTACTCAGTAGAATATGCAGAGAATAATACCCCAGAAAAGGAGAAACGTAAAATGTCCAGTAATAAGAAGGCTCCCAAACCTCCAAGACCTCCTCGAGCTCCTTCGTGGGATGTAGCTGACCAGAAGCTAATCAGGGAGATCACTGAACTCGCCATGCTAAAGCGTGCGAGGATAGAGCGAATGAAAGCCTTGAAGAAGATGAAAGCTGCTAAGGCATCGTCATCTTCCAGTAGCAGCACGTTTGCTATGGTTTTCACTGTTGTCTTCTGTATTGTCGTATTACTCCAAGGTAATATTCCTTTAATAAAATTAATTCTTATCATCATATGA

Predicted protein sequences of Glyma17g04001

Limit To All Plant Sequences

>Glyma17g04001.1   sequence type=predicted peptide   gene model=Glyma17g04001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHKSAKDEDAEVDLESGLVLTDYESKDVSTQGNTKQGKIILTKISCGFAGDCIKGEDRYSGCCKESKLTVVSMDMVKVTNKLYSVEYAENNTPEKEKRKMSSNKKAPKPPRPPRAPSWDVADQKLIREITELAMLKRARIERMKALKKMKAAKASSSSSSSTFAMVFTVVFCIVVLLQGNIPLIKLILIII*

>Glyma17g04001.2   sequence type=predicted peptide   gene model=Glyma17g04001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHKSAKDEDAEVDLESGLVLTDYESKDVSTQGNTKQGKIILTKISCGFAGDCIKGEDRYSGCCKESKLTVVSMDMVKVTNKLYSVEYAENNTPEKEKRKMSSNKKAPKPPRPPRAPSWDVADQKLIREITELAMLKRARIERMKALKKMKAAKASSSSSSSTFAMVFTVVFCIVVLLQGNIPLIKLILIII*

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