Glyma17g03990 - SoyBase

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Report for Sequence Feature Glyma17g03990

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2636724
stop:	2646770
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06580	AT	Annotation by Michelle Graham. TAIR10: Mevalonate/galactokinase family protein \| chr3:2049141-2051867 REVERSE LENGTH=496	SoyBase	E_val: 0	ISS
GO:0006012	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactose metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046835	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate phosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004335	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactokinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG0631	KOG	Galactokinase	JGI		ISS
PTHR10457	Panther	MEVALONATE KINASE/GALACTOKINASE	JGI		ISS
PTHR10457:SF7	Panther	GALACTOKINASE 2	JGI		ISS
PF00288	PFAM	GHMP kinases N terminal domain	JGI		ISS
PF08544	PFAM	GHMP kinases C terminal	JGI		ISS
PF10509	PFAM	Galactokinase galactose-binding signature	JGI		ISS
UniRef100_I1MRT3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MRT3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5ZP80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Galactokinase n=1 Tax=Pisum sativum RepID=Q5ZP80_PEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03990

Paralog	Evidence	Comments
Glyma07g36610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g035800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g03990

Limit To All Plant Sequences

>Glyma17g03990.2   sequence type=transcript   gene model=Glyma17g03990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGAGATCTACAATCTCTGTCAATCTCTATCAGGGTTGGCACTTGGCAGTTCCTGATTTGTTAATCAGATATTTTTAAAAAATTAAAATCTCAATGAATCAGTTAAGTAAATAGCAAGAGTAAAAAAAAAAAAAATAGAAAAGAAGGTTTCTATCGAATGAGACGAGTCAGTGCCACGTAATAGCTATCTTGGGTTGTTTCCAAATTCCAAATCTCAATCGTCATCATCATGGTTCGCTATCCAAATAACGTTTTTGTAATGCAAGGACAATCATATCATCAACAGTCCGAATAAAGAAATACAACGAGCTGATAGAGGAGACAAGAAAAGAAAGAGAAAGAGTTTGCAGAGTTGAATTCCGAAAGAGGAATGGCGAAGCACGAGGAGCTTCCTATCCCGATTAACAATAACCTAGAACCCGTCTATGGCGGAGGTTCCGCACTCGAAGAAGCTCAGCTTCGTTTCGATAATTTGAAGTCCAAATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGACACGATCGTGGCGATTCGGAAAAATGAGGCGGAAAAGGTTCTCAAGATAGCTAACGTGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGGTACAAAGGTTTCCATGACTATGCAAAGTTGAAAGGAGTGAATGTTGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGGTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGAAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAGGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACCCAATTCGTGCAACAGATGTGCAACTTCCTGCTGGTGGGACTTTTGTGATAGCTCATTCTTTGGCAGAGTCTCAAAAGGCTGTTACTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAAGTGAGCACACTGTCTGATGTTGAAGGGTTATGCGTATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAGGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACAGGGGAAAAGCTGACTTCATTTTTGAACAATAATGCAGCTTATTTAGAAGTGTTAAAAGTTGCAAAGCAATACAAGTTGCATCAGAGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTTGGGGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGATCTTGGCCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTGCTGCTATCTTCAAGTTTTAGTGTTCTTTAACCCGCTTCCCTTCTTATGGCTGCGACTTTCTTCCCCTGAGATCTAGACACAGATTAGATGCAATTTCTGATGGAGTAAGATTAAATGGTACCATATTTTCTTTGTTAAATTATTTTAGTTGATACGATGAAAGCAAATAATGATAATATTGCCGAACGGCTTTTAAGTCGCAGCCTTAACCCGCTTCCCTTCTTATGGCTGCGACTTTCTGTAATGGAAAAATAAACTTGTTATCACCAAAACGTTTCAACTTTCTTCTCGAGATAATGAACCTGGAAGTTCACGTAAACGTAAATCTTAAATTACATTT

Coding sequences of Glyma17g03990

Limit To All Plant Sequences

>Glyma17g03990.1   sequence type=CDS   gene model=Glyma17g03990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGCACGAGGAGCTTCCTATCCCGATTAACAATAACCTAGAACCCGTCTATGGCGGAGGTTCCGCACTCGAAGAAGCTCAGCTTCGTTTCGATAATTTGAAGTCCAAATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGACACGATCGTGGCGATTCGGAAAAATGAGGCGGAAAAGGTTCTCAAGATAGCTAACGTGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGGTACAAAGGTTTCCATGACTATGCAAAGTTGAAAGGAGTGAATGTTGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGGTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGAAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAGGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACCCAATTCGTGCAACAGATGTGCAACTTCCTGCTGGTGGGACTTTTGTGATAGCTCATTCTTTGGCAGAGTCTCAAAAGGCTGTTACTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAAGTGAGCACACTGTCTGATGTTGAAGGGTTATGCGTATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAGGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACAGGGGAAAAGCTGACTTCATTTTTGAACAATAATGCAGCTTATTTAGAAGTGTTAAAAGTTGCAAAGCAATACAAGTTGCATCAGAGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTTGGGGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGATCTTGGCCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTGCTGCTATCTTCAAGTTTTAG

>Glyma17g03990.2   sequence type=CDS   gene model=Glyma17g03990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGCACGAGGAGCTTCCTATCCCGATTAACAATAACCTAGAACCCGTCTATGGCGGAGGTTCCGCACTCGAAGAAGCTCAGCTTCGTTTCGATAATTTGAAGTCCAAATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGACACGATCGTGGCGATTCGGAAAAATGAGGCGGAAAAGGTTCTCAAGATAGCTAACGTGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGGTACAAAGGTTTCCATGACTATGCAAAGTTGAAAGGAGTGAATGTTGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGGTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGAAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAGGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACCCAATTCGTGCAACAGATGTGCAACTTCCTGCTGGTGGGACTTTTGTGATAGCTCATTCTTTGGCAGAGTCTCAAAAGGCTGTTACTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAAGTGAGCACACTGTCTGATGTTGAAGGGTTATGCGTATCATTTGCTGGTATTTATAACTCATCTGATCCTGTACTTGCTGTAAAGGAATATTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAAGCAGTTACAGGGGAAAAGCTGACTTCATTTTTGAACAATAATGCAGCTTATTTAGAAGTGTTAAAAGTTGCAAAGCAATACAAGTTGCATCAGAGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTTCATGCTTTCAAGGATGTCGTATCTTCGAATCTAAGTGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTTGGGGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTTATCCTTAATTTGAAGGAATGTTTCTACCAGTCTAGAATAGACAAGGGCGTTATTAAGAAGAACGATCTTGGCCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTGCTGCTATCTTCAAGTTTTAG

Predicted protein sequences of Glyma17g03990

Limit To All Plant Sequences

>Glyma17g03990.1   sequence type=predicted peptide   gene model=Glyma17g03990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKHEELPIPINNNLEPVYGGGSALEEAQLRFDNLKSKFVEIFGHHPQIFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKNEAEKVLKIANVNGEKYSLCTYPADPLQEIDLKNHKWGHYFICGYKGFHDYAKLKGVNVGEPVGLEVLVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKELAQVTCDCERHIGTQSGGMDQAISVMAKTGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECHLASIVLAIKLGMDPKEAISKVSTLSDVEGLCVSFAGIYNSSDPVLAVKEYLKEEPYTAEEIEAVTGEKLTSFLNNNAAYLEVLKVAKQYKLHQRAAHVYSEAKRVHAFKDVVSSNLSDEDMLKKLGDLMNESHHSCSVLYECSCPELEELVNICRNNGALGARLTGAGWGGCAVALVKESIVPQFILNLKECFYQSRIDKGVIKKNDLGLYVFASKPSSGAAIFKF*

>Glyma17g03990.2   sequence type=predicted peptide   gene model=Glyma17g03990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKHEELPIPINNNLEPVYGGGSALEEAQLRFDNLKSKFVEIFGHHPQIFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKNEAEKVLKIANVNGEKYSLCTYPADPLQEIDLKNHKWGHYFICGYKGFHDYAKLKGVNVGEPVGLEVLVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKELAQVTCDCERHIGTQSGGMDQAISVMAKTGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECHLASIVLAIKLGMDPKEAISKVSTLSDVEGLCVSFAGIYNSSDPVLAVKEYLKEEPYTAEEIEAVTGEKLTSFLNNNAAYLEVLKVAKQYKLHQRAAHVYSEAKRVHAFKDVVSSNLSDEDMLKKLGDLMNESHHSCSVLYECSCPELEELVNICRNNGALGARLTGAGWGGCAVALVKESIVPQFILNLKECFYQSRIDKGVIKKNDLGLYVFASKPSSGAAIFKF*

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