Glyma17g03980 - SoyBase

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Report for Sequence Feature Glyma17g03980

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2632923
stop:	2636045
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21800	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr4:11573289-11574976 FORWARD LENGTH=379	SoyBase	E_val: 0	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1532	KOG	GTPase XAB1, interacts with DNA repair protein XPA	JGI		ISS
PTHR21231	Panther	XPA-BINDING PROTEIN 1-RELATED	JGI		ISS
PTHR21231:SF1	Panther	XPA-BINDING PROTEIN 1 (MBDIN)	JGI		ISS
PF03029	PFAM	Conserved hypothetical ATP binding protein	JGI		ISS
UniRef100_G7IEN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GPN-loop GTPase n=1 Tax=Medicago truncatula RepID=G7IEN9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MRT2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRT2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03980

Paralog	Evidence	Comments
Glyma07g36620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g035700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03980

Limit To All Plant Sequences

>Glyma17g03980.1   sequence type=CDS   gene model=Glyma17g03980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGCTGATAACGGTTCCAGAGACGCCAAACTCGACAACCAACACGCAAAAGACAAAGAAAAGGAGGAACTCACCGAGAATATGAACAAGTTGCATATTGAAGGATCTTCGTCTGGGAGTGGATCATCTAGCTTCAGAAGAAAACCTGTCATCATTATAGTTGTGGGAATGGCAGGGAGTGGGAAGACAACACTCATGCATAGGTTGGTATGCCATACACATTTGAAAGACATTCGGGGTTATGTGGTGAATCTCGATCCTGCCGTCATGACACTCCCATATGCTGCTAACATTGATGTGAGAGACACTGTTAAATACAAAGAAGTCATGAAGCAGTTTAACCTTGGCCCTAATGGTGGAATTTTGACTTCCCTGAACTTGTTTGCCACCAAGTTTGATGAGGTAATTTCTGTAATTGAGAAACGGGCAGATCAACTTGACTATGTTCTTGTGGATACCCCTGGTCAGATTGAAATATTTACCTGGTCTGCTTCTGGTGCTATCATTACAGAAGCTTTTGCATCTACATTTCCCACTGTAGTTGCCTATGTAGTTGATACACCCCGTTCAGAAGATCCCACCACTTTCATGAGCAACATGTTGTATGCTTGTAGTATCCTCTACAAGACAAGGTTACCTCTCATCTTGACTTTCAACAAGGTTGATGTAGCAGCACATCAGTTTGCTTTGGAGTGGATGGAGGATTTTGAGGCGTTCCAAACAGCCGCAAGTTCAGATCACTCGTACTCATCAACTTTAACTCAGAGCCTTTCTCTTGTGCTAGATGAATTCTACAACAATTTAAAATCTGTTGGAGTTTCTGCAGTTTCTGGTGTAGGAATGGAAGCCTTCTTTAATGCTGTCGAAGCCAGTGCAGAGGAATACATGGAGACATACAAGGCTGATCTTGATAAAAGACGTGAAGAGAAGCAACGTTTGGAGGAAGACCGCAGGAAGGAGAGCATGGATAAACTGAGGAGGGACATGGAGAAATCTGGGGGAGAAACTGTAGTCTTGAGCACTGGTTTGAAGGACAAAGAAGCAAGTAAAAGTATGATGGATGAGGAAGACGAGGACGAGGAAATGGATGATGATGATGATGATGATTTGGGGATATATACTGAAGAGGAAGATGCTATAGATGAGGACGAAGATGAGGAGGTTGATAGGTTCGGCTTCTGA

Predicted protein sequences of Glyma17g03980

Limit To All Plant Sequences

>Glyma17g03980.1   sequence type=predicted peptide   gene model=Glyma17g03980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNADNGSRDAKLDNQHAKDKEKEELTENMNKLHIEGSSSGSGSSSFRRKPVIIIVVGMAGSGKTTLMHRLVCHTHLKDIRGYVVNLDPAVMTLPYAANIDVRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSEDPTTFMSNMLYACSILYKTRLPLILTFNKVDVAAHQFALEWMEDFEAFQTAASSDHSYSSTLTQSLSLVLDEFYNNLKSVGVSAVSGVGMEAFFNAVEASAEEYMETYKADLDKRREEKQRLEEDRRKESMDKLRRDMEKSGGETVVLSTGLKDKEASKSMMDEEDEDEEMDDDDDDDLGIYTEEEDAIDEDEDEEVDRFGF*

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