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Report for Sequence Feature Glyma17g03960

Feature Type:gene_model
Chromosome:Gm17
Start:2615051
stop:2625171
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16280AT Annotation by Michelle Graham. TAIR10: RNA binding;abscisic acid binding | chr4:9207164-9214187 REVERSE LENGTH=672 SoyBaseE_val: 5.00E-176ISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009553GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac development SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0040029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0000785GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chromatin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG0144 KOG RNA-binding protein CUGBP1/BRUNO (RRM superfamily) JGI ISS
PTHR24011Panther FAMILY NOT NAMED JGI ISS
PTHR24011:SF260Panther JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
PF00397PFAM WW domain JGI ISS
UniRef100_G7JNZ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: FCA n=1 Tax=Medicago truncatula RepID=G7JNZ3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MRT0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRT0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g36630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g035500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g03960.2   sequence type=transcript   gene model=Glyma17g03960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTCTTCGTCGTCGTCGTCTCATTCGTGAGTAGTATTTATGAATTATGAATTTATGATTGTGTTGTGTCTAGTGGTGCATAGCAGCGTAAGCCAGAAAGACAAGAGGTGTCACTCCACCGGAGCAAAGGAACACATAACATAACCCACTTCTCCTTTTCTCTCTCTCTCTCTCTCACTATAGGGTTTCTGTTAGGGTTCCGCTCTGTTAAGCCAAGCTGGATAGACACAGAGGAGAACGTTACAACAACAACAATGATTTTCACAACAACAATAATAACTATCGTCACTCCAACAGGGGGGGCAACAACTCTCACTCGCGCTTCTCTGATTCTCCCATGAGCTACCACAACGCGCGCCAGAGCCCCGGGGGATTCCGCTCCGGCGCTGCTCCGCACCACCGCGCCTTCGATAGTCCCCCGCATCGCTCTCCCGGCAGGGGCGGAGGATTCCGGCCGATGGGCGCCGAGGGTCCCGCGGAATTCGGATTCAACGGCCACCAGGCGCCACCGCCGCTCGCTGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTGGTTCGCCCGATCGTTTAGATGGTGGAAGTTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCTCTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAGCATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTCGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTTATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCTTGCTTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACGGATCCTATTGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCCATGCATCCGCCAAATGTGGGGCCACCTTCTAATGCTGGTCTTCAGGGCATGGGGCCACCGTTGATTTCAAGATCTGGTGACATGGCATTGCCTACAAATGCGGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAAACCTGTTCAGTCATCCCAGGAACTGCCACATTCCCACCAGTTATACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGCCCAGCCACAACTTCCTCTTCCATCTCAGCAGGTACATGGAGTAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACCAATCTTGAAACCGGCATGCAATCTAATGCTGCACTAACTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAAATGATGCAACCTTCTAGTCAAGCATTAACATTCCAGCAAAATGCAGAAGCTACCAAAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGCTGTAGCACAAGCAGTGGCCAGCACTCGTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAACATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGGTATTATATGAACAGAAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCCCAAATCCAACATGTTCAGCCCCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCATCCTTCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAGTTACGGGCCCTCAAAATGTTCAGGAAGTGGGATATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCACAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGAACTTTGATGGGTTGAGCTTGAGGCGGCTAATACAGATGTCACAGCTTCAAAAGGTAGGGACAACCATCTTCATTTTGATGCTTCAAAAAGGTAGGGGACTACCGTCTTCATTTTGATCCCATGTGACATGTAACAATTTATTTGCATTGGCGAGTTATTTTGGCCCTCGTTGTCGAGGTTTCACTATCTGGCTCAGCACTAAGGATGTGGGATTCAAAATACATGGCAGGGGAAATGCCCTACCCAGATCGTTCTGTCCCATAATATTTGCTTAAATATAAATTTTAACCATTAATTTTAGGGACACATCTTACAAAATTTTTAGGTGCTTGCAGTGATGGTTTCCTAATAAAATAATAACGGTTATTGAGAAGAGCAT

>Glyma17g03960.1   sequence type=CDS   gene model=Glyma17g03960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTACCACAACGCGCGCCAGAGCCCCGGGGGATTCCGCTCCGGCGCTGCTCCGCACCACCGCGCCTTCGATAGTCCCCCGCATCGCTCTCCCGGCAGGGGCGGAGGATTCCGGCCGATGGGCGCCGAGGGTCCCGCGGAATTCGGATTCAACGGCCACCAGGCGCCACCGCCGCTCGCTGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTGGTTCGCCCGATCGTTTAGATGGTGGAAGTTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCTCTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAGCATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTCGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTTATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCTTGCTTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACGGATCCTATTGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCCATGCATCCGCCAAATGTGGGGCCACCTTCTAATGCTGGTCTTCAGGGCATGGGGCCACCGTTGATTTCAAGATCTGGTGACATGGCATTGCCTACAAATGCGGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCAGTCAATCAACAAATATCACCATTGCAGAAACCTGTTCAGTCATCCCAGGAACTGCCACATTCCCACCAGTTATACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGCCCAGCCACAACTTCCTCTTCCATCTCAGCAGGTACATGGAGTAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACCAATCTTGAAACCGGCATGCAATCTAATGCTGCACTAACTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAAATGATGCAACCTTCTAGTCAAGCATTAACATTCCAGCAAAATGCAGAAGCTACCAAAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGCTGTAGCACAAGCAGTGGCCAGCACTCGTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAACATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGGTATTATATGAACAGAAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCCCAAATCCAACATGTTCAGCCCCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCATCCTTCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAGTTACGGGCCCTCAAAATGTTCAGGAAGTGGGATATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCACAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA

>Glyma17g03960.2   sequence type=CDS   gene model=Glyma17g03960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTACCACAACGCGCGCCAGAGCCCCGGGGGATTCCGCTCCGGCGCTGCTCCGCACCACCGCGCCTTCGATAGTCCCCCGCATCGCTCTCCCGGCAGGGGCGGAGGATTCCGGCCGATGGGCGCCGAGGGTCCCGCGGAATTCGGATTCAACGGCCACCAGGCGCCACCGCCGCTCGCTGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTGGTTCGCCCGATCGTTTAGATGGTGGAAGTTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCTCTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAGCATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTCGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTTATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCTTGCTTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACGGATCCTATTGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCCATGCATCCGCCAAATGTGGGGCCACCTTCTAATGCTGGTCTTCAGGGCATGGGGCCACCGTTGATTTCAAGATCTGGTGACATGGCATTGCCTACAAATGCGGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAAACCTGTTCAGTCATCCCAGGAACTGCCACATTCCCACCAGTTATACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGCCCAGCCACAACTTCCTCTTCCATCTCAGCAGGTACATGGAGTAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACCAATCTTGAAACCGGCATGCAATCTAATGCTGCACTAACTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAAATGATGCAACCTTCTAGTCAAGCATTAACATTCCAGCAAAATGCAGAAGCTACCAAAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGCTGTAGCACAAGCAGTGGCCAGCACTCGTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAACATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGGTATTATATGAACAGAAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCCCAAATCCAACATGTTCAGCCCCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCATCCTTCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAGTTACGGGCCCTCAAAATGTTCAGGAAGTGGGATATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCACAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA

>Glyma17g03960.1   sequence type=predicted peptide   gene model=Glyma17g03960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYHNARQSPGGFRSGAAPHHRAFDSPPHRSPGRGGGFRPMGAEGPAEFGFNGHQAPPPLAGQKRGFPFSGRGGGSPDRLDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRHPSNITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLPLPSQQVHGVSGQFPTSQPQTQQSALSAAIPQTNLETGMQSNAALTTPNQQQVPPSVQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV*

>Glyma17g03960.2   sequence type=predicted peptide   gene model=Glyma17g03960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYHNARQSPGGFRSGAAPHHRAFDSPPHRSPGRGGGFRPMGAEGPAEFGFNGHQAPPPLAGQKRGFPFSGRGGGSPDRLDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRHPSNITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLPLPSQQVHGVSGQFPTSQPQTQQSALSAAIPQTNLETGMQSNAALTTPNQQQVPPSVQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV*







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