Report for Sequence Feature Glyma17g03960
Feature Type: gene_model
Chromosome: Gm17
Start: 2615051
stop: 2625171
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g03960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G16280 AT
Annotation by Michelle Graham. TAIR10: RNA binding;abscisic acid binding | chr4:9207164-9214187 REVERSE LENGTH=672
SoyBase E_val: 5.00E-176 ISS
GO:0007062 GO-bp
Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion
SoyBase N/A ISS
GO:0009553 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo sac development
SoyBase N/A ISS
GO:0009790 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0009909 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of flower development
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0031048 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA
SoyBase N/A ISS
GO:0040029 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic
SoyBase N/A ISS
GO:0045132 GO-bp
Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation
SoyBase N/A ISS
GO:0048316 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed development
SoyBase N/A ISS
GO:0000785 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chromatin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
KOG0144
KOG
RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
JGI ISS
PTHR24011 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24011:SF260 Panther
JGI ISS
PF00076 PFAM
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JGI ISS
PF00397 PFAM
WW domain
JGI ISS
UniRef100_G7JNZ3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: FCA n=1 Tax=Medicago truncatula RepID=G7JNZ3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MRT0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRT0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g03960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g03960
Paralog Evidence Comments
Glyma07g36630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g03960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g035500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g03960
Transcripts of Glyma17g03960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g03960.2 sequence type=transcript gene model=Glyma17g03960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACTTTCTTCGTCGTCGTCGTCTCATTCGTGAGTAGTATTTATGAATTATGAATTTATGATTGTGTTGTGTCTAGTGGTGCATAGCAGCGTAAGCCAGAAAGACAAGAGGTGTCACTCCACCGGAGCAAAGGAACACATAACATAACCCACTTCTCCTTTTCTCTCTCTCTCTCTCTCACTATAGGGTTTCTGTTAGGGTTCCGCTCTGTTAAGCCAAGCTGGATAGACACAGAGGAGAACGTTACAACAACAACAATGATTTTCACAACAACAATAATAACTATCGTCACTCCAACAGGGGGGGCAACAACTCTCACTCGCGCTTCTCTGATTCTCCCATGAGCTACCACAACGCGCGCCAGAGCCCCGGGGGATTCCGCTCCGGCGCTGCTCCGCACCACCGCGCCTTCGATAGTCCCCCGCATCGCTCTCCCGGCAGGGGCGGAGGATTCCGGCCGATGGGCGCCGAGGGTCCCGCGGAATTCGGATTCAACGGCCACCAGGCGCCACCGCCGCTCGCTGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTGGTTCGCCCGATCGTTTAGATGGTGGAAGTTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCTCTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAGCATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTCGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTTATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCTTGCTTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACGGATCCTATTGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCCATGCATCCGCCAAATGTGGGGCCACCTTCTAATGCTGGTCTTCAGGGCATGGGGCCACCGTTGATTTCAAGATCTGGTGACATGGCATTGCCTACAAATGCGGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAAACCTGTTCAGTCATCCCAGGAACTGCCACATTCCCACCAGTTATACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGCCCAGCCACAACTTCCTCTTCCATCTCAGCAGGTACATGGAGTAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACCAATCTTGAAACCGGCATGCAATCTAATGCTGCACTAACTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAAATGATGCAACCTTCTAGTCAAGCATTAACATTCCAGCAAAATGCAGAAGCTACCAAAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGCTGTAGCACAAGCAGTGGCCAGCACTCGTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAACATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGGTATTATATGAACAGAAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCCCAAATCCAACATGTTCAGCCCCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCATCCTTCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAGTTACGGGCCCTCAAAATGTTCAGGAAGTGGGATATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCACAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGAACTTTGATGGGTTGAGCTTGAGGCGGCTAATACAGATGTCACAGCTTCAAAAGGTAGGGACAACCATCTTCATTTTGATGCTTCAAAAAGGTAGGGGACTACCGTCTTCATTTTGATCCCATGTGACATGTAACAATTTATTTGCATTGGCGAGTTATTTTGGCCCTCGTTGTCGAGGTTTCACTATCTGGCTCAGCACTAAGGATGTGGGATTCAAAATACATGGCAGGGGAAATGCCCTACCCAGATCGTTCTGTCCCATAATATTTGCTTAAATATAAATTTTAACCATTAATTTTAGGGACACATCTTACAAAATTTTTAGGTGCTTGCAGTGATGGTTTCCTAATAAAATAATAACGGTTATTGAGAAGAGCAT
Coding sequences of Glyma17g03960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g03960.1 sequence type=CDS gene model=Glyma17g03960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCTACCACAACGCGCGCCAGAGCCCCGGGGGATTCCGCTCCGGCGCTGCTCCGCACCACCGCGCCTTCGATAGTCCCCCGCATCGCTCTCCCGGCAGGGGCGGAGGATTCCGGCCGATGGGCGCCGAGGGTCCCGCGGAATTCGGATTCAACGGCCACCAGGCGCCACCGCCGCTCGCTGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTGGTTCGCCCGATCGTTTAGATGGTGGAAGTTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCTCTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAGCATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTCGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTTATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCTTGCTTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACGGATCCTATTGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCCATGCATCCGCCAAATGTGGGGCCACCTTCTAATGCTGGTCTTCAGGGCATGGGGCCACCGTTGATTTCAAGATCTGGTGACATGGCATTGCCTACAAATGCGGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCAGTCAATCAACAAATATCACCATTGCAGAAACCTGTTCAGTCATCCCAGGAACTGCCACATTCCCACCAGTTATACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGCCCAGCCACAACTTCCTCTTCCATCTCAGCAGGTACATGGAGTAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACCAATCTTGAAACCGGCATGCAATCTAATGCTGCACTAACTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAAATGATGCAACCTTCTAGTCAAGCATTAACATTCCAGCAAAATGCAGAAGCTACCAAAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGCTGTAGCACAAGCAGTGGCCAGCACTCGTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAACATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGGTATTATATGAACAGAAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCCCAAATCCAACATGTTCAGCCCCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCATCCTTCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAGTTACGGGCCCTCAAAATGTTCAGGAAGTGGGATATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCACAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA
>Glyma17g03960.2 sequence type=CDS gene model=Glyma17g03960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCTACCACAACGCGCGCCAGAGCCCCGGGGGATTCCGCTCCGGCGCTGCTCCGCACCACCGCGCCTTCGATAGTCCCCCGCATCGCTCTCCCGGCAGGGGCGGAGGATTCCGGCCGATGGGCGCCGAGGGTCCCGCGGAATTCGGATTCAACGGCCACCAGGCGCCACCGCCGCTCGCTGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTGGTTCGCCCGATCGTTTAGATGGTGGAAGTTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCTCTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAGCATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTCGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTTATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCTTGCTTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACGGATCCTATTGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCCATGCATCCGCCAAATGTGGGGCCACCTTCTAATGCTGGTCTTCAGGGCATGGGGCCACCGTTGATTTCAAGATCTGGTGACATGGCATTGCCTACAAATGCGGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAAACCTGTTCAGTCATCCCAGGAACTGCCACATTCCCACCAGTTATACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGCCCAGCCACAACTTCCTCTTCCATCTCAGCAGGTACATGGAGTAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACCAATCTTGAAACCGGCATGCAATCTAATGCTGCACTAACTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAAATGATGCAACCTTCTAGTCAAGCATTAACATTCCAGCAAAATGCAGAAGCTACCAAAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGCTGTAGCACAAGCAGTGGCCAGCACTCGTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAACATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGGTATTATATGAACAGAAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCCCAAATCCAACATGTTCAGCCCCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCATCCTTCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAGTTACGGGCCCTCAAAATGTTCAGGAAGTGGGATATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCACAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA
Predicted protein sequences of Glyma17g03960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g03960.1 sequence type=predicted peptide gene model=Glyma17g03960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSYHNARQSPGGFRSGAAPHHRAFDSPPHRSPGRGGGFRPMGAEGPAEFGFNGHQAPPPLAGQKRGFPFSGRGGGSPDRLDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRHPSNITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLPLPSQQVHGVSGQFPTSQPQTQQSALSAAIPQTNLETGMQSNAALTTPNQQQVPPSVQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV*
>Glyma17g03960.2 sequence type=predicted peptide gene model=Glyma17g03960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSYHNARQSPGGFRSGAAPHHRAFDSPPHRSPGRGGGFRPMGAEGPAEFGFNGHQAPPPLAGQKRGFPFSGRGGGSPDRLDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRHPSNITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLPLPSQQVHGVSGQFPTSQPQTQQSALSAAIPQTNLETGMQSNAALTTPNQQQVPPSVQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV*