Glyma17g03950 - SoyBase

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Report for Sequence Feature Glyma17g03950

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2603938
stop:	2607105
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47260	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 23 \| chr2:19405045-19406446 REVERSE LENGTH=337	SoyBase	E_val: 1.00E-56	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B9RZT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RZT1_RICCO	SoyBase	E_val: 2.00E-79	ISS
UniRef100_I1MRS9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRS9_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma17g03950

Locus	Gene Symbol	Protein Name
	WRKY160	WRKY Transcription Factor

Expression Patterns of Glyma17g03950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03950

Paralog	Evidence	Comments
Glyma07g36640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g035400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g03950

Limit To All Plant Sequences

>Glyma17g03950.4   sequence type=transcript   gene model=Glyma17g03950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGTTTTTGAGAAATAGTTTTAAACAAAAAGAGAGAGAAAGAAAAGAAAATGAGGAATATGTGCAAAGGTTTTTGTCGATATATAGCACCTACAATTCATTAAAAGCAATGGAGGAGAAGAGAGAGAAAGAGAAAAACTCAAAGTCATCATCATCTACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCTAACATGAGCATGAGCTTCCCTTTCTCCCCTGCTTTCTCTAGTAGCATCTTTGACATGATGCCACCACCACCACCTTCCTCATCTCACGATCCTAAAGCTCCCAACTTTGCTAATAGCTTCATGGACTTGCTCGCTGTCCCTGCTGATTATTATACCCCTTCTTTATTCGACTGGTCCCAAAACACCGCCCCCACGTCAGCACCACCACCTTCCACCACCCAAATCAACCACCCTCTTCCGTCGCCAGCCAGCTCCAATGTCCCCGACGGCTCCGAGGTTCTCAACACTCCGGCGTCTCCCAATTCTTCGTCTATTTCATCATCGTCCAACGAAGCAGCAGCCGCCACCACCGCCAACAAAACAACGGGAAATGATAATGAAGAGGAGGAAGATGAAACAGCAATAGATGCAACAGCAGGCAGAGAAGAAGAAGATCATCAAGACCAAGACAAGACTAAGAAACAGCTCAAGCCAAAAAAGAAGAACCAAAAAAAGCAAAGAGAGCCGAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGGAGCTATTATCGTTGCACCACCGCGACATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGATCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACTCACCCGTGTCCTGCCACGTCACGGGCTAGCTTCGGGTTCATGCACTCCGAAGCAAGTGGGTTCGGACCCACCAGTGGACTAGGTTCGGCACACTTTATGCTGCAACAACAACAACAGTTTCGGGACCAAGCACAAGCACAAGCAGCAATGTTGTATAACTCCACCTCATCGTCATTGTCATTGCCACTGAATGTTGTTAACTCAGCTTCTTGTGTTAATAATAGCTATGCCAATACGTCATCGTTGAGTGGCTTTCTTCAGGGCCAAGAGAATCATCAGCGAGGTTTTGTGCCGTCTAGGGTGGTGGCTCCTCATATTTTCTTGAGGGACAATGGGCTTCTTCAGGACATTGTTCCAACGCAGATGGGGAATGAGGAGAATGAAGATCGTGTGTAGGTGATGATCATCATAATATATAGTCATATTTTGGGTTAATTAATTAATCATAGAACTTAATTATGACAAATTAGTTTATTTTAATTATTTTGTTGTATATTAATTATATGTATCTTTGTATGGTATATTATTATGTACCGTTGGTTCTTTAGCTAACTGAACTAATGGTGAAAAGTGAAAACCTCTATGGGCGGGCTTCTTGGGGTGTTTTGTGTTTTACTTTAGAGGTTACCATAGAGAAACCTCGCTTCAACTGATGGCTTGTGTTCATATGAAACATTTTGGAGGTTCCCACTTTTTATGGTTAGATAATAGATATATATGGAGGGACTTTGTATTCTGATTTTGTGACTTTAACTTTTTTTTCTTTTTTCCTTCTATATATGGTAATTCTTTGTAACTAGATATTTATATATTCAACGATTAGCCATTTTTGTCCCCTTTTTTTTTTTAAAAAAATATTGTTTTCTCGTCTTTCTCATGTCATCCGCATTATTAGCTTCTTTAGTACTTCCTCGTGATTATGATCTTTTGGTTCGATGGATTTTTTCATGGTGGAAAACCCAATGTTTTTTAGGGCTAGGGTTTTTTCTTAATTTGTTCAGTTACTTGCATGTGGTGAAATGCTTTAGCTAGCTGCGTCTTTTCCCTCTCAGATACTTATGGTGGCAGAGACTTAATGTGGGAAAGGGAAAGTCAAGAATATAAGCTAATAAGCAATGGAGCAGGGAACTCTATATCTATGATGAGGGAAATTTAAGAAAGAAAGATGAAAACTATGCACCAGAGAGAGTGTTATGATTGCCCCATGACTTGACACAATGCATGAGGTATGGAAAAAGTTGTAACATTATTACTTGAGTAGTACCGTTTAGCTTTTTGTGTATGATGGCTTTTCTCATCATCTTCCCCTATAAGCTATAAACAAAGATGGGCTTCAGCCATTCAATGATGATGTGTGTTTCCAGGGAAGGAAATAGTTAGAGCATGGATTGTTTCTTGATGATTGCAAAAGATGGATGATGTGAGATATTGGTGTGGAGAAAAGTATTATATATATATATGGTTCTCATGCCCTAGCATAGCATACATGTTTTGTTTTGTAATACTAGCAGAAGCCATATGGGCCATGCTACTATCCCTATCCCTGCTTGGGAATTAGATTCATTAATTATTTGACGTACAACCCTTTGATGC

Coding sequences of Glyma17g03950

Limit To All Plant Sequences

>Glyma17g03950.3   sequence type=CDS   gene model=Glyma17g03950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGAAGAGAGAGAAAGAGAAAAACTCAAAGTCATCATCATCTACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCTAACATGAGCATGAGCTTCCCTTTCTCCCCTGCTTTCTCTAGTAGCATCTTTGACATGATGCCACCACCACCACCTTCCTCATCTCACGATCCTAAAGCTCCCAACTTTGCTAATAGCTTCATGGACTTGCTCGCTGTCCCTGCTGATTATTATACCCCTTCTTTATTCGACTGGTCCCAAAACACCGCCCCCACGTCAGCACCACCACCTTCCACCACCCAAATCAACCACCCTCTTCCGTCGCCAGCCAGCTCCAATGTCCCCGACGGCTCCGAGGTTCTCAACACTCCGGCGTCTCCCAATTCTTCGTCTATTTCATCATCGTCCAACGAAGCAGCAGCCGCCACCACCGCCAACAAAACAACGGGAAATGATAATGAAGAGGAGGAAGATGAAACAGCAATAGATGCAACAGCAGGCAGAGAAGAAGAAGATCATCAAGACCAAGACAAGACTAAGAAACAGCTCAAGCCAAAAAAGAAGAACCAAAAAAAGCAAAGAGAGCCGAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGGAGCTATTATCGTTGCACCACCGCGACATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGATCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACTCACCCGTGTCCTGCCACGTCACGGGCTAGCTTCGGGTTCATGCACTCCGAAGCAAGTGGGTTCGGACCCACCAGTGGACTAGGTTCGGCACACTTTATGCTGCAACAACAACAACAGTTTCGGGACCAAGCACAAGCACAAGCAGCAATGTTGTATAACTCCACCTCATCGTCATTGTCATTGCCACTGAATGTTGTTAACTCAGCTTCTTGTGTTAATAATAGCTATGCCAATACGTCATCGTTGAGTGGCTTTCTTCAGGGCCAAGAGAATCATCAGCGAGGTTTTGTGCCGTCTAGGGTGGTGGCTCCTCATATTTTCTTGAGGGACAATGGGCTTCTTCAGGACATTGTTCCAACGCAGATGGGGAATGAGGAGAATGAAGATCGTGTGTAG

>Glyma17g03950.4   sequence type=CDS   gene model=Glyma17g03950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGAAGAGAGAGAAAGAGAAAAACTCAAAGTCATCATCATCTACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCTAACATGAGCATGAGCTTCCCTTTCTCCCCTGCTTTCTCTAGTAGCATCTTTGACATGATGCCACCACCACCACCTTCCTCATCTCACGATCCTAAAGCTCCCAACTTTGCTAATAGCTTCATGGACTTGCTCGCTGTCCCTGCTGATTATTATACCCCTTCTTTATTCGACTGGTCCCAAAACACCGCCCCCACGTCAGCACCACCACCTTCCACCACCCAAATCAACCACCCTCTTCCGTCGCCAGCCAGCTCCAATGTCCCCGACGGCTCCGAGGTTCTCAACACTCCGGCGTCTCCCAATTCTTCGTCTATTTCATCATCGTCCAACGAAGCAGCAGCCGCCACCACCGCCAACAAAACAACGGGAAATGATAATGAAGAGGAGGAAGATGAAACAGCAATAGATGCAACAGCAGGCAGAGAAGAAGAAGATCATCAAGACCAAGACAAGACTAAGAAACAGCTCAAGCCAAAAAAGAAGAACCAAAAAAAGCAAAGAGAGCCGAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGGAGCTATTATCGTTGCACCACCGCGACATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGATCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACTCACCCGTGTCCTGCCACGTCACGGGCTAGCTTCGGGTTCATGCACTCCGAAGCAAGTGGGTTCGGACCCACCAGTGGACTAGGTTCGGCACACTTTATGCTGCAACAACAACAACAGTTTCGGGACCAAGCACAAGCACAAGCAGCAATGTTGTATAACTCCACCTCATCGTCATTGTCATTGCCACTGAATGTTGTTAACTCAGCTTCTTGTGTTAATAATAGCTATGCCAATACGTCATCGTTGAGTGGCTTTCTTCAGGGCCAAGAGAATCATCAGCGAGGTTTTGTGCCGTCTAGGGTGGTGGCTCCTCATATTTTCTTGAGGGACAATGGGCTTCTTCAGGACATTGTTCCAACGCAGATGGGGAATGAGGAGAATGAAGATCGTGTGTAG

Predicted protein sequences of Glyma17g03950

Limit To All Plant Sequences

>Glyma17g03950.3   sequence type=predicted peptide   gene model=Glyma17g03950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKREKEKNSKSSSSTMANSVAFSDEIPNMSMSFPFSPAFSSSIFDMMPPPPPSSSHDPKAPNFANSFMDLLAVPADYYTPSLFDWSQNTAPTSAPPPSTTQINHPLPSPASSNVPDGSEVLNTPASPNSSSISSSSNEAAAATTANKTTGNDNEEEEDETAIDATAGREEEDHQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASFGFMHSEASGFGPTSGLGSAHFMLQQQQQFRDQAQAQAAMLYNSTSSSLSLPLNVVNSASCVNNSYANTSSLSGFLQGQENHQRGFVPSRVVAPHIFLRDNGLLQDIVPTQMGNEENEDRV*

>Glyma17g03950.4   sequence type=predicted peptide   gene model=Glyma17g03950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKREKEKNSKSSSSTMANSVAFSDEIPNMSMSFPFSPAFSSSIFDMMPPPPPSSSHDPKAPNFANSFMDLLAVPADYYTPSLFDWSQNTAPTSAPPPSTTQINHPLPSPASSNVPDGSEVLNTPASPNSSSISSSSNEAAAATTANKTTGNDNEEEEDETAIDATAGREEEDHQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASFGFMHSEASGFGPTSGLGSAHFMLQQQQQFRDQAQAQAAMLYNSTSSSLSLPLNVVNSASCVNNSYANTSSLSGFLQGQENHQRGFVPSRVVAPHIFLRDNGLLQDIVPTQMGNEENEDRV*

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