Glyma17g03910 - SoyBase

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Report for Sequence Feature Glyma17g03910

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2554550
stop:	2555923
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49480	AT	Annotation by Michelle Graham. TAIR10: Ca2+-binding protein 1 \| chr5:20070812-20071294 FORWARD LENGTH=160	SoyBase	E_val: 7.00E-53	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0027	KOG	Calmodulin and related proteins (EF-Hand superfamily)	JGI		ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_I1MRS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRS4_SOYBN	SoyBase	E_val: 6.00E-108	ISS
UniRef100_Q9SWP6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hypersensitive reaction associated Ca2+-binding protein n=1 Tax=Phaseolus vulgaris RepID=Q9SWP6_PHAVU	SoyBase	E_val: 2.00E-72	ISS

Expression Patterns of Glyma17g03910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03910

Paralog	Evidence	Comments
Glyma07g36700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g034900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03910

Limit To All Plant Sequences

>Glyma17g03910.1   sequence type=CDS   gene model=Glyma17g03910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCCCTTCCGGTCGCACCCTCCTCCCTTCCTCCGTCTCCGATTTCCGACCGGCATTCGACGTCCTCGATGCCGACCGCGACGGCAAAATCAGCCGCGACGACCTCCGCGCCTTCTACGCCGGAGTCGGCGGCGGAGGAGATGACGTGATCGGGGCAATGATGACAGTGGCTGACACCAATAAGGACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTCTCGGCGGAGAGAAAGCCCGTGGGGTACTGTGGGGCCATGGAGGACGTGTTCAGGGTCATGGACAAGGACGGCGACGGCAAGCTCAGCCACCATGATCTGAAGACTTACATGGCCTGCGCTGGTTTTCCGGCCACCGACAACGACATCAACGCCATGATCCGATTCGGCGGCGGCGACCAAAACGGCGGCGTTACGTTCGATGGTTTGCTTCGTATATTGGCGCTTGATTGTTCCCCCGCTAATTAA

Predicted protein sequences of Glyma17g03910

Limit To All Plant Sequences

>Glyma17g03910.1   sequence type=predicted peptide   gene model=Glyma17g03910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCPSGRTLLPSSVSDFRPAFDVLDADRDGKISRDDLRAFYAGVGGGGDDVIGAMMTVADTNKDGFVEYEEFERVVSAERKPVGYCGAMEDVFRVMDKDGDGKLSHHDLKTYMACAGFPATDNDINAMIRFGGGDQNGGVTFDGLLRILALDCSPAN*

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