SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G53480 | AT | Annotation by Michelle Graham. TAIR10: pleiotropic drug resistance 9 | chr3:19825366-19831644 FORWARD LENGTH=1450 | SoyBase | E_val: 3.00E-40 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0010359 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0071366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to indolebutyric acid stimulus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| PTHR19241 | Panther | ATP-BINDING CASSETTE TRANSPORTER | JGI | ISS | |
| PTHR19241:SF95 | Panther | JGI | ISS | ||
| UniRef100_Q5W274 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pleiotropic drug resistance protein 3 n=1 Tax=Nicotiana tabacum RepID=PDR3_TOBAC | SoyBase | E_val: 2.00E-39 | ISS |
| UniRef100_UPI000233F3A6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F3A6 related cluster n=1 Tax=unknown RepID=UPI000233F3A6 | SoyBase | E_val: 1.00E-173 | ISS |
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Glyma17g03863 not represented in the dataset |
Glyma17g03863 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g034700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g03863.2 sequence type=transcript gene model=Glyma17g03863 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTAGAAGCTTGTTGCTTCACAAAATGAAGTAGAAAAGGAATGAACCATGCCACTTCGATATATCCTTGCGTGCTCTTATTAAATTCTGACCACGTATACCTTCCTGTTTCTTACTAAAATATTTTCAATCATGTCTCAGCATGGACTTTGGTGATTAATTAATGTATCAGTGAAAGCTCAGTTACAATAATAGTATAAAAAAGGTTTGTAGTTGTATTCCTTTTCATTAGGTACCTTAACAGCATGTTCAATTCCCCATTCACATGACAAAATGCATTGCATCATCAAAGAGGCCAATATCAAGCTTACAAACACAGCATGGAAGTTTCTATATAATGTTCAGAAGAGGATCAAAATATGATGCATTCCACACATATCTGAGTTTTAATCCCCTTAGTGTTGTGTTGAGATGGCACAGCTGGCAGGTGCGGATGAGATAGAGTCTCTGAGAAATGAGTTAGCAGAGATAGGAAGGAACATAAGGTCCTCATTTAGAAGTCATGCCTCTAGTTTCCAGAGAGTTTCAAGCATCAATCCTGTGCAACAAGAAGTTGATAACGACGCCGGAGAAGCGTTACAATGGGCTGAAATTCAGAGGCTACCCACCTTTGAGAGAATTACTTCAGCTTTGTTTGATGTTTATGATGGCATGGAAACAGGTTGTTGATGTCAGAAAGCTTGGAGCTCAAGAACGGCACACGTTCATAGAGAAGCTTATTAAACACATTGAGAATGATAACCTTCGATTGCTGCAGAAATTCAGGAAAAGAATTGACAAAGTTGGTATTAATTTGCCCACAGTGGAACTGAGGTACCAAAATCTGTCTGTGGAAGCTGAGTGTAAAATAGTCCAAGGCAAGCCCATACCTACACTGTGGAATACCCTAAAAGAATGGATCTTTGACACCACTAAATTGTCAGTTCTGAAATCTCAAAATTCCAAGATAAGCATCATCAAAAATGACAATGGAATTATTAAGCCTGGAAGGATGACCTTATTGCTTGGCCCACCAGCAAGTGGTCAACCCTTTTTTTTTAGAACACAAATTAAATTTATAACATATAGATACATGACTAATGTTTTATAAAATTAAAGACTTATTGATTTTTTATATTAACCTTACAACCATACAAGAAACTATTAGAGGTTTGTTTCAATATATTGTTTAATTACTAATAAGATGTATTTTGAATAAAACATAGTCTCGTTGATGTCTGGCATGTGCACGATGATAGTGGTTCAAATTTTTATAATTTCTACTAAATTGATATGAACTTTGTAAATTATTTAGATAGTGTGAGATTTCCTGGCTTGTTGTTGGTGTGAATTTATTATTTTCCAAATTTGCAATGGAGAATTGATCTTTGTAGGAACGATTATGCAAATCTTTCCAAATATAACATCATGCAATCTTTGGTTTCATGGATCACAATAACCAATAAATTATCATTGATTACACCTCTTCAAAACTTCAAATAATGGATATGTTGTGAAAGACATTGGAACTGATGTTTGACAACTCCAATCTATCTTTTTGAATGTAGCACCATTTTCATAGATCTTGTCCAAGTGTGGTAATTTCTCTCACCTAGAGATAGCAAAAAAACTCGTACATGTGGGTATTTGTCTGAATCCGTCTCGATTTTGACGAATAATATTCGAGTTGACCAGGTATAAGTTCGGATGGAATTACTACATTCACCCCGACCCCAGACCCAGACCTGTCCCGCCACTTAAATTTTTTAGAATTTTTTGCATAATTTAATCAAAAAGTCTAGAATTTTTATTACTTGTTAATTTTATTTTAGAATTTTTATATAACTTAATATTCTTTCCTTAACGATTTTTGTAGACACATGCGCTATAATAAATTTATTGACATATAAGTAGTTAAAAATAAATGTTTAATAATCAATTTATTTTTTTCTAAAATTAAATTTTTAATATTTTTTTTATAAAAAATATTTTTTTAATTTGAATCGGATGTGGGTCAGGGATACCCGATACCTGATAGGTACAGGGATGAGATAATAAATTGGGTATCAGGTATGAGGGCATATTGGGAGTCGGAGTCGGGGATTGGAGAGACAATATCCGTCCCCGTCCCCATCCCGCCCCATTGCCATGTCCATCGAGAGGAAAAGATACCATTAGACATTAGTTTTATTTTATTTTTTCAAAAGCGAAGTAAGCATTTGAATTAGTGAGGTAATCAATTTCCTAACTCTCCACTTGAACACCTAGACAATTAGCCAATGAAAATAAATTGAGAAAGAAGTAGGGAAAGTGGATGGACCAGAGCTACTAAAGCTCTTATACCATCTTAACAAACAAAACATGATCAAGGAAAACTTATTCATTTTCATTCTCAACTATACGTATAATTACTTATACAATACTACTATATGATATGAAATTCTAAAGTATGAAACACACGAAAGATAACGTGCAATTAAGAGAATTCAAGAGCAGTGGGCATTTTTTTATAGCTGCAGTGAAGCGATTTTTAGCACATGTGAAAGTTAATTTCCAGAAAGGGAAAAGGGTGTTTTGGGGGAAAAATGTCCAAAATGTAAGAGGAGGTATGTTTTAAAATTAATGGAGGTGCATATTTCGATAGCCTAATACTATATTTATATGAATACATTGAATGGACTAGTCCGATATGATCCAGGGGATTTTTTTTCCTGCAGCATATTTTTTCATACACCCGGCAGGTGAGAAGGAAAAATTAAAAATACCCTTAGGTATAGTCCATATGAATCCATATGACCCATGCAGGTGTTCAACACGTGATCTTTACGTTAAACTAACCAATAACCAATTAAATTAATATGTCAATAATGTTAAAAAATAATTAGACTTAATTACAAAAAGAGTTCCCTTAATTATTTTTTTCATTTTTTAAATTGGTTATCTTATTTTTTAATTCACTATCGAAGTCTCCTTATTTCTCAAAATTCATTATATGAGTCCCAAGAAAAAAAATTGAATGTTGACCGTTAACTTATTTTACACGTATGAAATTCCCGTTGCTTAATTTGGATTCATGTTGTTGATTTTGGAAATTATGAATTTTTGTTAATGTGAAGGTTAGAGATTTTGGATGGATAAAGT
>Glyma17g03863.1 sequence type=CDS gene model=Glyma17g03863 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCTAGTTTCCAGAGAGTTTCAAGCATCAATCCTGTGCAACAAGAAGTTGATAACGACGCCGGAGAAGCGTTACAATGGGCTGAAATTCAGAGGCTACCCACCTTTGAGAGAATTACTTCAGCTTTGTTTGATGTTTATGATGGCATGGAAACAGGTTGTTGATGTCAGAAAGCTTGGAGCTCAAGAACGGCACACGTTCATAGAGAAGCTTATTAAACACATTGAGAATGATAACCTTCGATTGCTGCAGAAATTCAGGAAAAGAATTGACAAAGTTGGTATTAATTTGCCCACAGTGGAACTGAGGTACCAAAATCTGTCTGTGGAAGCTGAGTGTAAAATAGTCCAAGGCAAGCCCATACCTACACTGTGGAATACCCTAAAAGAATGGATCTTTGACACCACTAAATTGTCAGTTCTGAAATCTCAAAATTCCAAGATAAGCATCATCAAAAATGACAATGGAATTATTAAGCCTGGAAGGTATGCTATACTAAGTTTAACAGTGTTATTGTACCGGAATTATTTACTGCCAGTTATTATTTGTTACCTCATTTGGAATTTGGAATATTTATTGACTGTATTTGATGTTAGCTTATTATATTTATTCCGTTGCAGGATGACCTTATTGCTTGGCCCACCAGCAAGTGGTCAACCCTTTTTTTTTAGAACACAAATTAAATTTATAACATATAGATACATGACTAATGTTTTATAA >Glyma17g03863.2 sequence type=CDS gene model=Glyma17g03863 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCTAGTTTCCAGAGAGTTTCAAGCATCAATCCTGTGCAACAAGAAGTTGATAACGACGCCGGAGAAGCGTTACAATGGGCTGAAATTCAGAGGCTACCCACCTTTGAGAGAATTACTTCAGCTTTGTTTGATGTTTATGATGGCATGGAAACAGGTTGTTGATGTCAGAAAGCTTGGAGCTCAAGAACGGCACACGTTCATAGAGAAGCTTATTAAACACATTGAGAATGATAACCTTCGATTGCTGCAGAAATTCAGGAAAAGAATTGACAAAGTTGGTATTAATTTGCCCACAGTGGAACTGAGGTACCAAAATCTGTCTGTGGAAGCTGAGTGTAAAATAGTCCAAGGCAAGCCCATACCTACACTGTGGAATACCCTAAAAGAATGGATCTTTGACACCACTAAATTGTCAGTTCTGAAATCTCAAAATTCCAAGATAAGCATCATCAAAAATGACAATGGAATTATTAAGCCTGGAAGGATGACCTTATTGCTTGGCCCACCAGCAAGTGGTCAACCCTTTTTTTTTAGAACACAAATTAAATTTATAACATATAGATACATGACTAATGTTTTATAA
>Glyma17g03863.1 sequence type=predicted peptide gene model=Glyma17g03863 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPLVSREFQASILCNKKLITTPEKRYNGLKFRGYPPLRELLQLCLMFMMAWKQVVDVRKLGAQERHTFIEKLIKHIENDNLRLLQKFRKRIDKVGINLPTVELRYQNLSVEAECKIVQGKPIPTLWNTLKEWIFDTTKLSVLKSQNSKISIIKNDNGIIKPGRYAILSLTVLLYRNYLLPVIICYLIWNLEYLLTVFDVSLLYLFRCRMTLLLGPPASGQPFFFRTQIKFITYRYMTNVL* >Glyma17g03863.2 sequence type=predicted peptide gene model=Glyma17g03863 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPLVSREFQASILCNKKLITTPEKRYNGLKFRGYPPLRELLQLCLMFMMAWKQVVDVRKLGAQERHTFIEKLIKHIENDNLRLLQKFRKRIDKVGINLPTVELRYQNLSVEAECKIVQGKPIPTLWNTLKEWIFDTTKLSVLKSQNSKISIIKNDNGIIKPGRMTLLLGPPASGQPFFFRTQIKFITYRYMTNVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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