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Report for Sequence Feature Glyma17g03840

Feature Type:gene_model
Chromosome:Gm17
Start:2533794
stop:2536662
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g03840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06430AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1956658-1958240 REVERSE LENGTH=486 SoyBaseE_val: 0ISS
GO:0009553GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac development SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0048868GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube development SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0019843GO-mf Annotation by Michelle Graham. GO Molecular Function: rRNA binding SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7JQ34UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JQ34_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MRS1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRS1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g03840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g03840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g034600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g03840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g03840
>Glyma17g03840.1   sequence type=CDS   gene model=Glyma17g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCATATCTTTGTCTTTTTGTTCTTCCATCGTCCCCTCTCGAATTCCCCACGACAAATCCAACAAAACCCACAGCCATCATAACCCTACTTTCCCTCTCATTCGCTTTGGCATTTCAGCTCCCGCCGTCAAAAAGCGACACTGGAAAAAAGGGGAGTTTCCTGCTACTTCCCAACCATCCTTCCCCAACGACACTAGGAGGAAGACCCCTCTTAAGAACCTCAAGAAGAAATTCGACAAAAAGAACGATGCCAAGGCATGGGTCAACACTGTCACCGAATCCTTATCCGAACGCATCCACAACAAACACTGGCTTCAGGCCCTCCAGGTATTTGATATGCTTAGAGAGCAAACCTTTTACCAACCCAAAGAAGGGACTTGCATGAAACTCATTGTGTTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCATCAGCTTTTTACCACAATGATTGAAGAAGGTTTAGAACCTACTCCTGAACTGTACACAGCGTTGCTCGCTGCGTATTGCAGGAGCAACATGATTGATGAGGCGTTTTCAGTTCTTAATGAGATGAAGAAGCTTCCTCTTTGCCAGCCTGATGTTTTCACTTACAGTACCTTGATCAAAGTTTGTGTCGATGCTTTCAAATTTGATTTGGTTCAGTTGCTGTATGAAGAAATGGCTGAAAGGTCTATCACGCCAAACACAGTCACTCAGAACATTGTTTTGGGTGGTTATGGCAAGGCGGGCATGTTTGATCAGATGGAGAAAGTGCTGTCCAGCATGCTGCAGAGCACTACATGCAAGCCTGATGTTTGGACAATGAACACAATCATCAGTGTTTTTGGTAACATGGGTCAGATTGATATGACGGAAAAATGGTATGAAAAATTCCGTTATTTTGGGATAGAACCAGAGACGCGCACTTTTAATATTTTGATAGGTGCCTATGGGAAGAAAAGAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGTAAGTTGCAATTTCCGTGGACGACCTCTACTTACAACAATGTGATTGAGGCATTTGCTGATGCAGGTGATGCGAAGCACATGGAATGTACATTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTATGCTGCCTTATCAATGGTTATGCAAATGCTGGTCTCTTCCATAAAGTAATTAGCAGTGTTCGCTTGGCGGGAAAGCTTGAGATACCTGAGAATATCACCTTTTATAATGCGGTCTTATCTGCGTGTGCAAAGGCAGAGGATTTGATGGAAATGGAGAGAGTTTTCAAGCGTATGAAAGATAGCCAGTGTCAGCCAGATGACACAACATACACGATCATGATCGAGGCATATAGAAAAGAGGGTATGAATGACAAGATATACTATTTGGAGCAGGAAAAGCAGACGATGATGACTGATGATAAAAAAGCTAGCCAGTTTGAGAATGAAATCTTAATTTGA
Predicted protein sequences of Glyma17g03840
>Glyma17g03840.1   sequence type=predicted peptide   gene model=Glyma17g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASISLSFCSSIVPSRIPHDKSNKTHSHHNPTFPLIRFGISAPAVKKRHWKKGEFPATSQPSFPNDTRRKTPLKNLKKKFDKKNDAKAWVNTVTESLSERIHNKHWLQALQVFDMLREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAYCRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVQLLYEEMAERSITPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMTEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGKLEIPENITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAYRKEGMNDKIYYLEQEKQTMMTDDKKASQFENEILI*






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