Glyma17g03790 - SoyBase

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Report for Sequence Feature Glyma17g03790

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2513821
stop:	2514834
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16920	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 23 \| chr2:7334559-7338827 REVERSE LENGTH=1102	SoyBase	E_val: 1.00E-78	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0417	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_I1MRR8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MRR8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HSK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme, E2 n=1 Tax=Medicago truncatula RepID=Q2HSK9_MEDTR	SoyBase	E_val: 8.00E-114	ISS

Expression Patterns of Glyma17g03790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03790

Paralog	Evidence	Comments
Glyma07g36760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g034300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03790

Limit To All Plant Sequences

>Glyma17g03790.2   sequence type=CDS   gene model=Glyma17g03790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTAAAGACGAATGAGTTTGGGCACTTCGACGTCGTTTCGGATGACTCAGATCACCACTTTCTGGGTTCAAATAATGGAAAATGCTTCTATGATTCAAATAGTAAAGTCTACAGAACCATTATGAAAGAGTGGAAAATCCTGGAGCAAAGCTTACCCGAATCAATCTACGTGCGTGTCTACGAGCGACGCATTGATCTAATGAGGGCCGTGATCGTAGGTACCGCGGGCACACCTTACCACGATGGTCTCTTCTTCTTCGACATCATGTTCCCCTCTGATTACCCTAAACACCCTCCAATGCTGCATTTCCATTCCTTCGGGTACCGAATCAACCCAAATCTCTACATCAACGGCAAAGTGTGTTTGAGCCTTCTGAACACGTGGAACGGGAAAGGAACGGAGATGTGGGACCCATCCAAGTCGACGATGCTCCAAGTGCTGGTCTCCATCCAAGGACTCGTTCTCAACAAGAACCCTTACTTTAACGAGCCTCTGCGTCTCTTCGATTCTGAGAGCAAGTCACGTGTCTACAACGAGAACGCGTTCATCATTACTTGCTACACCTCCTTCCTTCTGCTTCAGAGGCCGCTCCGAAACTTCGAAGCATTCGTCAGTGCCCATTTTTGCGAGCGGGCGTTTCCGATTCTCTCTGCCTGCAGCGACTACGTGAACGGGCGCGTGGAAGTTGGGTACTATTCTAGTGACCTGCGTTCGTCTTCGTCAACGGTACGAGTTTCAAGGGAATTCAAGGAGAAGATGATACAGTTTTACCCTAAGCTTTTTCAAGCGTTTCGACTGAAAGGTGCTTCTGTGGGGGGTTTGGTCGAACACTTGGAGTTGGAGATTGAGCAATCCGAAAAGAAAAGTAGCGGCGGCGGGCAAAGGCAGCAATTGAAGAACAAAAGCAGAAGAATCTTCAAGAAGGTCATGGAAAAGATCAAACAAACTTTGGGATGGAAGAAAAAGAGCCAGATTGAAGGGAGAGATCGCAGTCTTCAAAGTTCTTAA

Predicted protein sequences of Glyma17g03790

Limit To All Plant Sequences

>Glyma17g03790.2   sequence type=predicted peptide   gene model=Glyma17g03790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVKTNEFGHFDVVSDDSDHHFLGSNNGKCFYDSNSKVYRTIMKEWKILEQSLPESIYVRVYERRIDLMRAVIVGTAGTPYHDGLFFFDIMFPSDYPKHPPMLHFHSFGYRINPNLYINGKVCLSLLNTWNGKGTEMWDPSKSTMLQVLVSIQGLVLNKNPYFNEPLRLFDSESKSRVYNENAFIITCYTSFLLLQRPLRNFEAFVSAHFCERAFPILSACSDYVNGRVEVGYYSSDLRSSSSTVRVSREFKEKMIQFYPKLFQAFRLKGASVGGLVEHLELEIEQSEKKSSGGGQRQQLKNKSRRIFKKVMEKIKQTLGWKKKSQIEGRDRSLQSS*

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