Report for Sequence Feature Glyma17g03770
Feature Type: gene_model
Chromosome: Gm17
Start: 2504356
stop: 2505372
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g03770
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G15355 AT
Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 25 | chr3:5183858-5186669 FORWARD LENGTH=609
SoyBase E_val: 5.00E-77 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016881 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity
SoyBase N/A ISS
KOG0417
KOG
Ubiquitin-protein ligase
JGI ISS
PTHR24067 Panther
UBIQUITIN-CONJUGATING ENZYME E2
JGI ISS
PTHR24067:SF12 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00179 PFAM
Ubiquitin-conjugating enzyme
JGI ISS
UniRef100_I1MRR7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MRR7_SOYBN
SoyBase E_val: 7.00E-180 ISS
UniRef100_Q2HSK9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme, E2 n=1 Tax=Medicago truncatula RepID=Q2HSK9_MEDTR
SoyBase E_val: 2.00E-105 ISS
Expression Patterns of Glyma17g03770
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma17g03770 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g034200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g03770
Coding sequences of Glyma17g03770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g03770.2 sequence type=CDS gene model=Glyma17g03770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAACAACCATTGAGAAACGCCATTGAAGTAACGACAAATGAGTTCGGGCAATTCGACGTGGTTTCAGATGATTCAGATCACCACTTTCTGGGTTCAGAGAAGGGAAAATGCTTCACCGATTCAAAGAGTGAAGCGTACCGCACCATCATGAGAGAGTGGAGAATCCTGGAGCATAACTTGCCCGAATCAATCTACGTGCGTGTCTACGAGCGACGCATTGATCTAATGAGGGCCGTGATTGTAGGTGCTGCCGGCACACCGTACCACGATGGTCTCTTCTTCTTCGACATTTTGTTCCCTTCTGATTACCCGAAGCACCCTCCAAAGCTGCATTTTGACTCTTTCGGGCTCCAAGTCAACCCAAATCTTCACCCCAGCGGCGAAGTGTGCTTGAGCCTTCTCAACACGTGGTACGGGAAAAAGAGGGAGAAGTGGGACCCATCAGGGTCGACCATGCTCCAAGTGTTGCTCTCCTTACAAAGTCTGGTTCTGAACGAGAACCCATACTTTAACGAGCCTGGTGCAACTACATTGGGGCGTTTAATAAACTTGGAGAGCACGTCACGTGTGTACAACGAGGACGTGTTCACCCAAACCTGTAAAATTTCCTTCCATCTGCTTCAGGATCCGCCTCGGAACTTTGAAGCCTTTGTCAGTGCCCATTTTCGCGAGCGAGCGTCACTGATTCTCGCGGCCTGCAATGAGTACGCGAATGGCCGCGTGAGAGTTGGGTATTACTCTTCTGATCACTTGCCTCCTTTGTCAAGGGTACAAGTTTCACGGAGTTTCAAGAAGCAGATGATAGAGTTTTACCCTCTGCTTCTTCGAGCGTTTCGACAGAACGATAATGCTTCTTTGGGGGGTTTCGTCCAACACTTGGAGCTGGAGACGGAGGAATCCGAATACAAAAGCACTGAAATCATCGAGGAGGTCGTCAACAAGATAGTTATCGGTTCTTTAATCTTCTTAATTTGTCTTGTTTCTTATTTATTACTGAAAAGGTTGGTATTTTAA
Predicted protein sequences of Glyma17g03770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g03770.2 sequence type=predicted peptide gene model=Glyma17g03770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQQPLRNAIEVTTNEFGQFDVVSDDSDHHFLGSEKGKCFTDSKSEAYRTIMREWRILEHNLPESIYVRVYERRIDLMRAVIVGAAGTPYHDGLFFFDILFPSDYPKHPPKLHFDSFGLQVNPNLHPSGEVCLSLLNTWYGKKREKWDPSGSTMLQVLLSLQSLVLNENPYFNEPGATTLGRLINLESTSRVYNEDVFTQTCKISFHLLQDPPRNFEAFVSAHFRERASLILAACNEYANGRVRVGYYSSDHLPPLSRVQVSRSFKKQMIEFYPLLLRAFRQNDNASLGGFVQHLELETEESEYKSTEIIEEVVNKIVIGSLIFLICLVSYLLLKRLVF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
