Glyma17g03760 - SoyBase

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Report for Sequence Feature Glyma17g03760

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2500051
stop:	2502525
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16210	AT	Annotation by Michelle Graham. TAIR10: enoyl-CoA hydratase/isomerase A \| chr4:9176864-9177978 REVERSE LENGTH=265	SoyBase	E_val: 1.00E-152	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1680	KOG	Enoyl-CoA hydratase	JGI		ISS
PTHR11941	Panther	ENOYL-COA HYDRATASE-RELATED	JGI		ISS
PF00378	PFAM	Enoyl-CoA hydratase/isomerase family	JGI		ISS
UniRef100_B0M193	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal enoyl-CoA hydratase/isomerase family protein n=1 Tax=Glycine max RepID=B0M193_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MRR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MRR5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03760

Paralog	Evidence	Comments
Glyma07g36770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g034100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g03760

Limit To All Plant Sequences

>Glyma17g03760.2   sequence type=transcript   gene model=Glyma17g03760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAATAATCAATCTAACGTAAATAAGTACTATAATAGCTATCTATCGAAACCAGCGAGCAAGATCGATTCGGGTCAAACATGGATGGGCAATCGCCGGAGAAACTGATTCTGGTGAAGCGCGAGTCAAACGGCGTCGCACTGGTGATGATTAATCGTCCCGGTTCCCTTAACTCGCTGACCCGGCCCATGATGGTGGACCTGGCCCAGGCTTTCAAGAGACTCGACCGGGACGAGTCGGTGCGGGTCGTCATATTAACCGGGTCGGGCCGGTCTTTCTGTTCTGGCGTGGATCTCACTTCGGCAGAGGACGTGTTCAAGGGCGATGTGAAGGACCCTGAGAGCGACCCGGTGGTGCAAATGGAGCTCTGCCGCAAGCCAATCATCGGAGCCATCCGAGGTTTCGCCGTCACTGCTGGCTTCGAAATTGCCCTCGCCTGTGACATCTTGGTTGCTGCCAAGGGATCTAAGTTCATGGACACTCATGCTAGGTTTGGGATATTTCCTTCGTGGGGTTTGTCTCAGAAGCTTTCGCAGATCATAGGGGCCAATAAAGCCCGGGAGGTATCTCTCTCGGCCACACCTTTGACTGCAGAGGTAGCTGAGAGGTTGGGTTTGGTGAACCATGTCATTGAAGAGGCTGAATTGTTGAAGAAAAGCAGGGAAATTGCGGATGCCATTGTGAAAAATAACCAAGACTTGGTTTTGAGGTACAAGGCGGTCATCAATGATGGCCTCAAGCTGGATCTTGGCCGCGCACTTTCTCTTGAAAAGGTCAGTGTTGTGTAGAATTTGTGTGTCTATAATTACATAACATGAATTCAATGAGACAGGTTGGTTTGGTTCTCTGGTCTAGGCCCACCATAACAACGATGTTTGTCTCTGTCATAACATGTTGAATGGTGCTTAGAATAATGTTGGATGATAGGCTAAAAGAATATAAAATAATGTACTTGGGATAGAAATTAA

Coding sequences of Glyma17g03760

Limit To All Plant Sequences

>Glyma17g03760.1   sequence type=CDS   gene model=Glyma17g03760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGCAATCGCCGGAGAAACTGATTCTGGTGAAGCGCGAGTCAAACGGCGTCGCACTGGTGATGATTAATCGTCCCGGTTCCCTTAACTCGCTGACCCGGCCCATGATGGTGGACCTGGCCCAGGCTTTCAAGAGACTCGACCGGGACGAGTCGGTGCGGGTCGTCATATTAACCGGGTCGGGCCGGTCTTTCTGTTCTGGCGTGGATCTCACTTCGGCAGAGGACGTGTTCAAGGGCGATGTGAAGGACCCTGAGAGCGACCCGGTGGTGCAAATGGAGCTCTGCCGCAAGCCAATCATCGGAGCCATCCGAGGTTTCGCCGTCACTGCTGGCTTCGAAATTGCCCTCGCCTGTGACATCTTGGTTGCTGCCAAGGGATCTAAGTTCATGGACACTCATGCTAGGTTTGGGATATTTCCTTCGTGGGGTTTGTCTCAGAAGCTTTCGCAGATCATAGGGGCCAATAAAGCCCGGGAGGTATCTCTCTCGGCCACACCTTTGACTGCAGAGGTAGCTGAGAGGTTGGGTTTGGTGAACCATGTCATTGAAGAGGCTGAATTGTTGAAGAAAAGCAGGGAAATTGCGGATGCCATTGTGAAAAATAACCAAGACTTGGTTTTGAGGTACAAGGCGGTCATCAATGATGGCCTCAAGCTGGATCTTGGCCGCGCACTTTCTCTTGAAAAGGAGAGGGCTCATGACTATTATAACGGAATGACGAAGGAGCAATTCAGGAAGATGCAGGAATTCATAGCTGGTCGAAGTTCCAAGAAACAGTCCAAATTGTAG

>Glyma17g03760.2   sequence type=CDS   gene model=Glyma17g03760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGCAATCGCCGGAGAAACTGATTCTGGTGAAGCGCGAGTCAAACGGCGTCGCACTGGTGATGATTAATCGTCCCGGTTCCCTTAACTCGCTGACCCGGCCCATGATGGTGGACCTGGCCCAGGCTTTCAAGAGACTCGACCGGGACGAGTCGGTGCGGGTCGTCATATTAACCGGGTCGGGCCGGTCTTTCTGTTCTGGCGTGGATCTCACTTCGGCAGAGGACGTGTTCAAGGGCGATGTGAAGGACCCTGAGAGCGACCCGGTGGTGCAAATGGAGCTCTGCCGCAAGCCAATCATCGGAGCCATCCGAGGTTTCGCCGTCACTGCTGGCTTCGAAATTGCCCTCGCCTGTGACATCTTGGTTGCTGCCAAGGGATCTAAGTTCATGGACACTCATGCTAGGTTTGGGATATTTCCTTCGTGGGGTTTGTCTCAGAAGCTTTCGCAGATCATAGGGGCCAATAAAGCCCGGGAGGTATCTCTCTCGGCCACACCTTTGACTGCAGAGGTAGCTGAGAGGTTGGGTTTGGTGAACCATGTCATTGAAGAGGCTGAATTGTTGAAGAAAAGCAGGGAAATTGCGGATGCCATTGTGAAAAATAACCAAGACTTGGTTTTGAGGTACAAGGCGGTCATCAATGATGGCCTCAAGCTGGATCTTGGCCGCGCACTTTCTCTTGAAAAGGTCAGTGTTGTGTAG

Predicted protein sequences of Glyma17g03760

Limit To All Plant Sequences

>Glyma17g03760.1   sequence type=predicted peptide   gene model=Glyma17g03760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGQSPEKLILVKRESNGVALVMINRPGSLNSLTRPMMVDLAQAFKRLDRDESVRVVILTGSGRSFCSGVDLTSAEDVFKGDVKDPESDPVVQMELCRKPIIGAIRGFAVTAGFEIALACDILVAAKGSKFMDTHARFGIFPSWGLSQKLSQIIGANKAREVSLSATPLTAEVAERLGLVNHVIEEAELLKKSREIADAIVKNNQDLVLRYKAVINDGLKLDLGRALSLEKERAHDYYNGMTKEQFRKMQEFIAGRSSKKQSKL*

>Glyma17g03760.2   sequence type=predicted peptide   gene model=Glyma17g03760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGQSPEKLILVKRESNGVALVMINRPGSLNSLTRPMMVDLAQAFKRLDRDESVRVVILTGSGRSFCSGVDLTSAEDVFKGDVKDPESDPVVQMELCRKPIIGAIRGFAVTAGFEIALACDILVAAKGSKFMDTHARFGIFPSWGLSQKLSQIIGANKAREVSLSATPLTAEVAERLGLVNHVIEEAELLKKSREIADAIVKNNQDLVLRYKAVINDGLKLDLGRALSLEKVSVV*

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