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Report for Sequence Feature Glyma17g03680

Feature Type:gene_model
Chromosome:Gm17
Start:2451441
stop:2456345
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g03680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17040AT Annotation by Michelle Graham. TAIR10: high chlorophyll fluorescent 107 | chr3:5809378-5812605 REVERSE LENGTH=652 SoyBaseE_val: 0ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0006417GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of translation SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
PTHR11246Panther PRE-MRNA SPLICING FACTOR JGI ISS
PTHR11246:SF9Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_B9RZQ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA splicing factor, putative n=1 Tax=Ricinus communis RepID=B9RZQ3_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233E245UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E245 related cluster n=1 Tax=unknown RepID=UPI000233E245 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g03680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03680
ParalogEvidenceComments
Glyma07g36870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g033400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g03680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g03680
>Glyma17g03680.1   sequence type=CDS   gene model=Glyma17g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGCCCTCCCTTCATCTTCCTCTTCCACCTTCACTTTCTTAACTCAGTCCAAGAACCCCAATCATCTCTTCAAGTTGACACATAAAGTACCCATTTTACCCCTACACTCACCTTCTCCATGTTGCTCCCTCAGTGACTCGTCCTCCTCGTCGACCACGGTGCTGGACAAAAATGCCCTTTCACCCGAACAGAATTCCCGCATTGCAGTTTCGCCGGATGACTCGAGCTTCGAGGAAGCCCTCGTGATTCGCCGGCCGGTGACGGATTTTTCCGCCGAATACTCCGGCGAGGAGGAGGAAGAAGAGAAGGAGACAAAAGAAGAAGAAGATGACCCGAAGGCTTCGGCGATCGACGAGGGGCTCGCGAGATTTGCGAAGAAGATGCCGATGTTTGAGCCAGAGAGGGTCGAATCCAAAGAGAGGCCACTCGCAATTAATTTGGACTTGGCGTTATACAGGGCGAAGCTTTTGGCTCGCAGAACCTTTCAGTATGAAAAGGCAGAGTCATTACTTCGTAAGTGTATAAGCCTTTGGCCTGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATATTGAGCAAGCAATCAAAAACAAGTGAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACGCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTAGAAATGCAAATGGGAAATATCAGGAGAGCAAGAGAGTTGTTTGATGCTGCCACAGTTGCTGACAAGAGGCATGTTGCTGCTTGGCATGGATGGGCAAATCTAGAATTAAAGCAGGGAAATCTAAAGAAGGCAAGGATTCTACTTGGTAAAGGTCTTCAATATTGTGGACAGAATGAGTACATATACCAAACACTTGCACGGCTTGAAGCTAGAGCAAATAGATATCTGCAGGCTCGATATTTATTCAATCAGGCCACTAAGTGTAATCCTAATAGTTGTGCTAGTTGGCTTAGTTGGGCGCAAATGGAGGTGGAGCAGGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCTAGTCCTAAAAATAGGTATGCTTGGCATGTATGGGGCGTTTTTGAAGCTAACATGGGCAACATTGACATGGGAAGAAAACTTTTAAAGATAGGTCATAATCTAAACCCAAGGGATGCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAATACTCAACTGCAAACGTTGCCCGGGTTTTGTTCAGGAGAGCATCTGAATTGAATCCAAGGCACCAGCCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAACGAAACTTGAATAAAGCCAGACAATTATACCAAAAAACTTTATCAATTGATCAAAACAGTGAAACTGCTGCCAGATGTCTCCAGGCTTGGGGTGTTCTGGAGCATAGGGTTGGCAATCTTTCAGCTGCTCGTCGATTATTTAAATCATCGTTGAATATAAATTCTCAGAGTTACGTGACATGGATGACTTGGGCATCAGTGGAGGAAGATCAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAATCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCCTAGGTATTTTAGACCCGGCTATTGACAGTTTAAAGAGAATCCTCAAGCTGAACCCAAATTCGTACAACATGCCACTGGATTCTTTGAGGAACATTGCGGGAACAAATAAAAACAGAGTTGATTCTTCTAGTGAAGACGAGGATGATGATGATGCAAATGGAAAAAGTGACTTTGATTTGGATGCTTTCATTAAGCAAAAGCTAACATTAGATTTGTCCAATCTAGAAATTCAGTTGGAAGAACCAAAATTTTATTCTGTGAAGAGAAGTACGTCTCCTAGAAGGATATGGCGACGATCAATTAATGAAATTGCTGAAGTGCAAGTCACACAGTAA
Predicted protein sequences of Glyma17g03680
>Glyma17g03680.1   sequence type=predicted peptide   gene model=Glyma17g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNALPSSSSSTFTFLTQSKNPNHLFKLTHKVPILPLHSPSPCCSLSDSSSSSTTVLDKNALSPEQNSRIAVSPDDSSFEEALVIRRPVTDFSAEYSGEEEEEEKETKEEEDDPKASAIDEGLARFAKKMPMFEPERVESKERPLAINLDLALYRAKLLARRTFQYEKAESLLRKCISLWPEDGRPYVVLGKILSKQSKTSEAREIYEKGCQATQGENAYIWQCWAVLEMQMGNIRRARELFDAATVADKRHVAAWHGWANLELKQGNLKKARILLGKGLQYCGQNEYIYQTLARLEARANRYLQARYLFNQATKCNPNSCASWLSWAQMEVEQENYRAARKLFEKAVQASPKNRYAWHVWGVFEANMGNIDMGRKLLKIGHNLNPRDAVLLQSLALLEYQYSTANVARVLFRRASELNPRHQPVWFAWGWMEWKERNLNKARQLYQKTLSIDQNSETAARCLQAWGVLEHRVGNLSAARRLFKSSLNINSQSYVTWMTWASVEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLGILDPAIDSLKRILKLNPNSYNMPLDSLRNIAGTNKNRVDSSSEDEDDDDANGKSDFDLDAFIKQKLTLDLSNLEIQLEEPKFYSVKRSTSPRRIWRRSINEIAEVQVTQ*






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