Glyma17g03660 - SoyBase

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Report for Sequence Feature Glyma17g03660

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2431405
stop:	2437778
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17030	AT	Annotation by Michelle Graham. TAIR10: Nucleic acid-binding proteins superfamily \| chr3:5804509-5808462 REVERSE LENGTH=668	SoyBase	E_val: 0	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_F4J3Z2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid-binding-like protein n=1 Tax=Arabidopsis thaliana RepID=F4J3Z2_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F224	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F224 related cluster n=1 Tax=unknown RepID=UPI000233F224	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03660

Paralog	Evidence	Comments
Glyma07g36900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g033200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g03660

Limit To All Plant Sequences

>Glyma17g03660.3   sequence type=transcript   gene model=Glyma17g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATTATACACGCAACCCTGGAAAGATCTCTCGTTCTGCATCTGAAAACTCAGCGACTCGAAAATGGAGAATAGAGGTTATGCCTGCAATACAAAGGTAGGCTCCGCCATGGACGTAGACCATTGCCAACAAAAGGAGGAGGAAGAAGAGCAAGAAGATCCTTTCCTCAAATTCGTGGATTACGCAAGATCTGAGCTATTATCGCTGGAAGGCGATCGAAACAAAGACGACGACGGTTCCGATGGACTTGGATGGAGTTGGATCGTTTCTCGTATTCTCAAGACTTGCATTGCTTATTCAAGCGGTGTCACTCCCGCGATCTTGCTCTCTGAACTCTCTCAGGCGTGGAGTGAGCAACGCTGGGTTGGGGCTCCGAAGAAGCCTCTCGAATTAATCAATCACCTCAAGAAGAATCATCGGAGGACAAAGCTTCCAAACACTGTTACCATTGATTCCATATACGCGAAGAACTTCCTGTCCTTGAACAGTGTTCTAGAAGCTGTTATTATTGATGCATTTGTGCTCCCAGGCACAAACATCCACATGCTTACATTAGGGGATTATTGGAGTTCCAATATCATAGATGTCTATCTACACCGCAGATTCTATGACTTGACAGGACTGCAGAATGGAATTCTGAAGCGAGGGAGAGAGATTTTCCTCACTGGTTGCTACCTCCGAACTGCCACTGGAGGTTCTGGACATCCACGTCTTTTGCCAACAGAGTATCTTGTGATTCTATTGGATGAGAATCAGGATGATGATGCAATGCTACTAGGAGCTCAGTTTTGTTCAGACCCTTTCTCTTCAATTTCTCTTGATGCGGTGAACCGAGGGGCTTCATATTCACTTTATGCCCGGATTGAAAAGATTGAATCTTCGGAAATTCACAGGAAGTTTGAAACCCTACAAAGAAAACAGATTACTCTTGTTGATGGTGATGGAGTCAAATTAAAGTTTTTCTTGTGGGGTGAGCAGATTCTCCTTGCCAATCTTTTCAGAGTGGGAAGCATGCTTGCACTGGACAAACCATACGTTAATATTTCAGTGGACTGTGATACTGAGACAAGTGAAGACTTATGTCTTGAATACGGAAGCGAAACACAACTATATTTGGTGCCTTATATTCAACATGAAGAACAGGTGTGCGTAACATTGACTCCAAACCGCCGTCATGGTTCACGGCCCTTGGGTTCTTTTAATTCCAGTCAGGATCTTAAGTTTTCTCAAGTGAGCTTGCCCCGTGATTCTCAGGGGACCATTGATTTCAGTAATTATCCTTTTCGGTCATTTGTGGTAGACCTTCGTATCAAGATGACTGGCATCAGTCTCTATGGTGCTGTTACAGATATTATCAAAGAAGAAAATAACCAACAAACTGTTTTCTCTTTAAGAATCGCAGATACTAGTGGAGAAATTTGGACAAAGCTTCATTTTGCGAGATTTTGGTCATTGGGAAGAGTTAGTTTCGGTCACACTGTATACATATCTGGCTTGACATGTACGATGTCAAAACAAAAGTGTCTGGAAGTATTATGGTTTGAGAATGATATTGGGGCTTCTTTCATCAATCTCAGTTGTTTACCAGCATTGATCAACTCATCTTGCCTTCATAAGCTATCGCGACTCACTGATATTTTTTACCAGACTAGCTATGCGCAACTTTTGTCGTACAATTTCTGATGCTGCGGTAGTACGCACGTTCCATCTGAAAATTACTCTTGCGGATAAGGATACGGGTACGAAAGTTTTAGCATGGTGCACAGGTCAAACTGCTATGGATTTGTTGCAAATATCTCCCGAGGAGTTTTATGAACTTCCCGAGGATGAACAAGTAATGTATCCTTCGTCATTAGAAAATGAAAGGTTTATGGTTGCATTGGTAAACTGCAAGCGAGATGGTTGTGTGATAGATGGCCTCTCGCCAGACGATTCAATTTCGTGGGAAATCACACGTGCATGTAAATGTGAATAATTGTTGAATGCACTACGATGGGGGAACTGGGATTGTAATGAGACTTTGAACGCACCATTCCTTCCACTATCGTTTAAGTTTTGAAGCCTGGAATGGAATGTATTTCTATTCTTCAGTGTAGTCGCTGGCACTGACTGCAGTGCACATGGTTATTCGTAAAGAGCGCTACCTCATGCGACGTGTCCAAAGGAAAGTGTAAGGATTTATAGTTCATCCATTGAGTATTGCTGTATATTTTGACTGAATATTTTATTTAATTAATTTATAAAATGAATTTAGTCTCATTATTTTTTATTAACGACTTTTAGATAGTCATCTCACCCCATCATTCTCATTTTCTTGTGTTTTTTTTTGTTTTTACTTGTCAATCTTGTCATTGCTCTAACCTTTGTTGGGAGGAGTTTTTTATATTCTGAGAGACTTGCATATTATATGGATAGATTCAAAATAAAAGAGGTCATGGGTTATAAA

Coding sequences of Glyma17g03660

Limit To All Plant Sequences

>Glyma17g03660.2   sequence type=CDS   gene model=Glyma17g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATAGAGGTTATGCCTGCAATACAAAGGTAGGCTCCGCCATGGACGTAGACCATTGCCAACAAAAGGAGGAGGAAGAAGAGCAAGAAGATCCTTTCCTCAAATTCGTGGATTACGCAAGATCTGAGCTATTATCGCTGGAAGGCGATCGAAACAAAGACGACGACGGTTCCGATGGACTTGGATGGAGTTGGATCGTTTCTCGTATTCTCAAGACTTGCATTGCTTATTCAAGCGGTGTCACTCCCGCGATCTTGCTCTCTGAACTCTCTCAGGCGTGGAGTGAGCAACGCTGGGTTGGGGCTCCGAAGAAGCCTCTCGAATTAATCAATCACCTCAAGAAGAATCATCGGAGGACAAAGCTTCCAAACACTGTTACCATTGATTCCATATACGCGAAGAACTTCCTGTCCTTGAACAGTGTTCTAGAAGCTGTTATTATTGATGCATTTGTGCTCCCAGGCACAAACATCCACATGCTTACATTAGGGGATTATTGGAGTTCCAATATCATAGATGTCTATCTACACCGCAGATTCTATGACTTGACAGGACTGCAGAATGGAATTCTGAAGCGAGGGAGAGAGATTTTCCTCACTGGTTGCTACCTCCGAACTGCCACTGGAGGTTCTGGACATCCACGTCTTTTGCCAACAGAGTATCTTGTGATTCTATTGGATGAGAATCAGGATGATGATGCAATGCTACTAGGAGCTCAGTTTTGTTCAGACCCTTTCTCTTCAATTTCTCTTGATGCGGTGAACCGAGGGGCTTCATATTCACTTTATGCCCGGATTGAAAAGATTGAATCTTCGGAAATTCACAGGAAGTTTGAAACCCTACAAAGAAAACAGATTACTCTTGTTGATGGTGATGGAGTCAAATTAAAGTTTTTCTTGTGGGGTGAGCAGATTCTCCTTGCCAATCTTTTCAGAGTGGGAAGCATGCTTGCACTGGACAAACCATACGTTAATATTTCAGTGGACTGTGATACTGAGACAAGTGAAGACTTATGTCTTGAATACGGAAGCGAAACACAACTATATTTGGTGCCTTATATTCAACATGAAGAACAGGTGTGCGTAACATTGACTCCAAACCGCCGTCATGGTTCACGGCCCTTGGGTTCTTTTAATTCCAGTCAGGATCTTAAGTTTTCTCAAGTGAGCTTGCCCCGTGATTCTCAGGGGACCATTGATTTCAGTAATTATCCTTTTCGGTCATTTGTGGTAGACCTTCGTATCAAGATGACTGGCATCAGTCTCTATGGTGCTGTTACAGATATTATCAAAGAAGAAAATAACCAACAAACTGTTTTCTCTTTAAGAATCGCAGATACTAGTGGAGAAATTTGGACAAAGCTTCATTTTGCGAGATTTTGGTCATTGGGAAGAGTTAGTTTCGGTCACACTGTATACATATCTGGCTTGACATGTACGATGTCAAAACAAAAGTGTCTGGAAGTATTATGGTTTGAGAATGATATTGGGGCTTCTTTCATCAATCTCAGTTGTTTACCAGCATTGATCAACTCATCTTGCCTTCATAAGCTATCGCGACTCACTGATATTTTTTACCAGACTAGCTATGCGCAAGTATGTCGAGTCTGGCTCGATCCATCTGAGTATTTTTACGTTAATACAATATTTTCACATTCTCTCTGTGGTCATTTTGTCAACAAGATTTCTGATAGATGGGTGGAATGCAGCTTTTGTCGTACAATTTCTGATGCTGCGGTAGTACGCACGTTCCATCTGAAAATTACTCTTGCGGATAAGGATACGGGTACGAAAGTTTTAGCATGGTGCACAGGTCAAACTGCTATGGATTTGTTGCAAATATCTCCCGAGGAGTTTTATGAACTTCCCGAGGATGAACAAGTAATGTATCCTTCGTCATTAGAAAATGAAAGGTTTATGGTTGCATTGGTAAACTGCAAGCGAGATGGTTGTGTGATAGATGGCCTCTCGCCAGACGATTCAATTTCGTGGGAAATCACACGTGCATGTAAATGTGAATAA

>Glyma17g03660.3   sequence type=CDS   gene model=Glyma17g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATAGAGGTTATGCCTGCAATACAAAGGTAGGCTCCGCCATGGACGTAGACCATTGCCAACAAAAGGAGGAGGAAGAAGAGCAAGAAGATCCTTTCCTCAAATTCGTGGATTACGCAAGATCTGAGCTATTATCGCTGGAAGGCGATCGAAACAAAGACGACGACGGTTCCGATGGACTTGGATGGAGTTGGATCGTTTCTCGTATTCTCAAGACTTGCATTGCTTATTCAAGCGGTGTCACTCCCGCGATCTTGCTCTCTGAACTCTCTCAGGCGTGGAGTGAGCAACGCTGGGTTGGGGCTCCGAAGAAGCCTCTCGAATTAATCAATCACCTCAAGAAGAATCATCGGAGGACAAAGCTTCCAAACACTGTTACCATTGATTCCATATACGCGAAGAACTTCCTGTCCTTGAACAGTGTTCTAGAAGCTGTTATTATTGATGCATTTGTGCTCCCAGGCACAAACATCCACATGCTTACATTAGGGGATTATTGGAGTTCCAATATCATAGATGTCTATCTACACCGCAGATTCTATGACTTGACAGGACTGCAGAATGGAATTCTGAAGCGAGGGAGAGAGATTTTCCTCACTGGTTGCTACCTCCGAACTGCCACTGGAGGTTCTGGACATCCACGTCTTTTGCCAACAGAGTATCTTGTGATTCTATTGGATGAGAATCAGGATGATGATGCAATGCTACTAGGAGCTCAGTTTTGTTCAGACCCTTTCTCTTCAATTTCTCTTGATGCGGTGAACCGAGGGGCTTCATATTCACTTTATGCCCGGATTGAAAAGATTGAATCTTCGGAAATTCACAGGAAGTTTGAAACCCTACAAAGAAAACAGATTACTCTTGTTGATGGTGATGGAGTCAAATTAAAGTTTTTCTTGTGGGGTGAGCAGATTCTCCTTGCCAATCTTTTCAGAGTGGGAAGCATGCTTGCACTGGACAAACCATACGTTAATATTTCAGTGGACTGTGATACTGAGACAAGTGAAGACTTATGTCTTGAATACGGAAGCGAAACACAACTATATTTGGTGCCTTATATTCAACATGAAGAACAGGTGTGCGTAACATTGACTCCAAACCGCCGTCATGGTTCACGGCCCTTGGGTTCTTTTAATTCCAGTCAGGATCTTAAGTTTTCTCAAGTGAGCTTGCCCCGTGATTCTCAGGGGACCATTGATTTCAGTAATTATCCTTTTCGGTCATTTGTGGTAGACCTTCGTATCAAGATGACTGGCATCAGTCTCTATGGTGCTGTTACAGATATTATCAAAGAAGAAAATAACCAACAAACTGTTTTCTCTTTAAGAATCGCAGATACTAGTGGAGAAATTTGGACAAAGCTTCATTTTGCGAGATTTTGGTCATTGGGAAGAGTTAGTTTCGGTCACACTGTATACATATCTGGCTTGACATGTACGATGTCAAAACAAAAGTGTCTGGAAGTATTATGGTTTGAGAATGATATTGGGGCTTCTTTCATCAATCTCAGTTGTTTACCAGCATTGATCAACTCATCTTGCCTTCATAAGCTATCGCGACTCACTGATATTTTTTACCAGACTAGCTATGCGCAACTTTTGTCGTACAATTTCTGA

Predicted protein sequences of Glyma17g03660

Limit To All Plant Sequences

>Glyma17g03660.2   sequence type=predicted peptide   gene model=Glyma17g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENRGYACNTKVGSAMDVDHCQQKEEEEEQEDPFLKFVDYARSELLSLEGDRNKDDDGSDGLGWSWIVSRILKTCIAYSSGVTPAILLSELSQAWSEQRWVGAPKKPLELINHLKKNHRRTKLPNTVTIDSIYAKNFLSLNSVLEAVIIDAFVLPGTNIHMLTLGDYWSSNIIDVYLHRRFYDLTGLQNGILKRGREIFLTGCYLRTATGGSGHPRLLPTEYLVILLDENQDDDAMLLGAQFCSDPFSSISLDAVNRGASYSLYARIEKIESSEIHRKFETLQRKQITLVDGDGVKLKFFLWGEQILLANLFRVGSMLALDKPYVNISVDCDTETSEDLCLEYGSETQLYLVPYIQHEEQVCVTLTPNRRHGSRPLGSFNSSQDLKFSQVSLPRDSQGTIDFSNYPFRSFVVDLRIKMTGISLYGAVTDIIKEENNQQTVFSLRIADTSGEIWTKLHFARFWSLGRVSFGHTVYISGLTCTMSKQKCLEVLWFENDIGASFINLSCLPALINSSCLHKLSRLTDIFYQTSYAQVCRVWLDPSEYFYVNTIFSHSLCGHFVNKISDRWVECSFCRTISDAAVVRTFHLKITLADKDTGTKVLAWCTGQTAMDLLQISPEEFYELPEDEQVMYPSSLENERFMVALVNCKRDGCVIDGLSPDDSISWEITRACKCE*

>Glyma17g03660.3   sequence type=predicted peptide   gene model=Glyma17g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENRGYACNTKVGSAMDVDHCQQKEEEEEQEDPFLKFVDYARSELLSLEGDRNKDDDGSDGLGWSWIVSRILKTCIAYSSGVTPAILLSELSQAWSEQRWVGAPKKPLELINHLKKNHRRTKLPNTVTIDSIYAKNFLSLNSVLEAVIIDAFVLPGTNIHMLTLGDYWSSNIIDVYLHRRFYDLTGLQNGILKRGREIFLTGCYLRTATGGSGHPRLLPTEYLVILLDENQDDDAMLLGAQFCSDPFSSISLDAVNRGASYSLYARIEKIESSEIHRKFETLQRKQITLVDGDGVKLKFFLWGEQILLANLFRVGSMLALDKPYVNISVDCDTETSEDLCLEYGSETQLYLVPYIQHEEQVCVTLTPNRRHGSRPLGSFNSSQDLKFSQVSLPRDSQGTIDFSNYPFRSFVVDLRIKMTGISLYGAVTDIIKEENNQQTVFSLRIADTSGEIWTKLHFARFWSLGRVSFGHTVYISGLTCTMSKQKCLEVLWFENDIGASFINLSCLPALINSSCLHKLSRLTDIFYQTSYAQLLSYNF*

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