SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G47350 | AT | Annotation by Michelle Graham. TAIR10: HIT zinc finger ;PAPA-1-like conserved region | chr2:19434588-19437045 FORWARD LENGTH=486 | SoyBase | E_val: 5.00E-28 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| PTHR21561 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR21561:SF10 | Panther | PAPA-1-LIKE FAMILY PROTEIN / ZINC FINGER (HIT TYPE | JGI | ISS | |
| PF04795 | PFAM | PAPA-1-like conserved region | JGI | ISS | |
| UniRef100_B9RZP6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZP6_RICCO | SoyBase | E_val: 1.00E-38 | ISS |
| UniRef100_I1MRQ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MRQ1_SOYBN | SoyBase | E_val: 4.00E-56 | ISS |
|
Glyma17g03625 not represented in the dataset |
Glyma17g03625 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g36940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g032900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g03625.1 sequence type=CDS gene model=Glyma17g03625 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTGTTTCCTTATTTTCCTATGTGTAGAAAAAGGAGTACGGTTTCACATCAACCTCGGGCTAATGCTGATACACTATTTCAGAGTTACTTTGGTCAGCTGTCACCAGTAGAACCTTTTGGAAAACAAGCTGAGAATGAGAATGTCAAGGAAAAAATGGATGCTTCTGCTGGATTAGAAACTGGAAACAAATTGAAGAAGCTAAAGCTCAAGTTTAGGGGTGTTACTCATACTATTCATGCCAAGTCAAAGACAGAAACAGGCTTCAGCAGTGATTCTTTAATAAAAAAAATTTCTCCTTGTTCTGATTGTTCTAAGCCACATGATGATACAGATGGTAATTATGTTTGTCCTTTTGATAAGAGAAAAGGCCTTGGCAATAAATTGCTAATGCCCTCTGTAACTGAATCTGGTTTTACAGCAGAGAATCATTCACATAGAGGAAAGACCACCGGAGAAACTATAGATGTCAATCATGAGCATGTCTGTGAGAGCAAGCACATTACCAGGAGATGTGCCTTGAGTGTGGAATTTAGTGATGAAGATAATAAAGATGCAGAACTTCATTTTCTCAAAGACCCTGGAATACCGGGCTCAATTAAATATGGTAAAATGAAATTGAAATCAGGGAAGAAATATGAGGATTCAGACTATGTGGAAGAAGATCCAACATCAAGTGACGAGTCAATATCGGAGTGGAAGAAGCCAAAGAGGGAATCTGTTGATTTACTTGTACAAAGAGGGAATCATACTTGTTCAGTTGACTCATTGAAAGATGTTTTATCTGGGTCAGCTGCAAGCATTGCCGACATCTCAGATGCTTTAGTTCCCATGAAATGGAGCAACAAGTCAAGAAAGCTGAGGCTGCAGAGACGTAAAATTCAATCAGAGAAGGCAGCTCGGGAAGCTGAGGCAGCCGCCATCAGAAAGATACTTGGTCAAGAATCGGGTAGGAAGAAGAGAGAGGATAAGATGAAGAAGCACAGGGATGAATTTGTTAAGGAAAAATCTAACAAATCCTTCAATTTAGGATCAAATACTGTTAGATTGACCATGAGACCCCAAGGAACTGTAGTAACTTTTTCTGAAGATATTGGTCTACCGAGTATCTTCCAAATGGGAACTAACAGAGAAAAATGCTCTGGTCCAAACTGCACTGATGAGTACAAGTACCGGGATTCCAAGTCAAAGTAA
>Glyma17g03625.1 sequence type=predicted peptide gene model=Glyma17g03625 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LFPYFPMCRKRSTVSHQPRANADTLFQSYFGQLSPVEPFGKQAENENVKEKMDASAGLETGNKLKKLKLKFRGVTHTIHAKSKTETGFSSDSLIKKISPCSDCSKPHDDTDGNYVCPFDKRKGLGNKLLMPSVTESGFTAENHSHRGKTTGETIDVNHEHVCESKHITRRCALSVEFSDEDNKDAELHFLKDPGIPGSIKYGKMKLKSGKKYEDSDYVEEDPTSSDESISEWKKPKRESVDLLVQRGNHTCSVDSLKDVLSGSAASIADISDALVPMKWSNKSRKLRLQRRKIQSEKAAREAEAAAIRKILGQESGRKKREDKMKKHRDEFVKEKSNKSFNLGSNTVRLTMRPQGTVVTFSEDIGLPSIFQMGTNREKCSGPNCTDEYKYRDSKSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
