Glyma17g03600 - SoyBase

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Report for Sequence Feature Glyma17g03600

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2408275
stop:	2409971
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16990	AT	Annotation by Michelle Graham. TAIR10: Haem oxygenase-like, multi-helical \| chr3:5795937-5796783 REVERSE LENGTH=221	SoyBase	E_val: 2.00E-98	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR25987	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25987:SF4	Panther		JGI		ISS
PF03070	PFAM	TENA/THI-4/PQQC family	JGI		ISS
UniRef100_Q9SWB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Seed maturation protein PM36 n=1 Tax=Glycine max RepID=PM36_SOYBN	SoyBase	E_val: 3.00E-169	ISS
UniRef100_Q9SWB6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein PM36 n=1 Tax=Glycine max RepID=PM36_SOYBN	SoyBase	E_val: 3.00E-169	ISS

Expression Patterns of Glyma17g03600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03600

Paralog	Evidence	Comments
Glyma07g36960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g032700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03600

Limit To All Plant Sequences

>Glyma17g03600.1   sequence type=CDS   gene model=Glyma17g03600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAAGGCAAAAGCTGAGCAGAAGAAGATAGGTATGACCGAGACTTGGTTGAAGAAGCACCGTCTTCTTTACAATGGAGCCACTAGACACCCTCTTATTATTAGCATTCGCGATGGCACCATCAACACTGCTTCCTTCAAAACATGGCTCGCACAGGATTACTTGTTCGTTCGGGCGTTTGTCCCATTTGTGGCTAGTGTGCTGATAAAAGCGTGGAAGGAATCAGATTGCAGTGGTGACATGGAAGTCATATTGGGGGGCATGGCTTCTCTGGAGGATGAGATTTCATGGTTCAAGACAGAAGCCAACAAGTGGGGTATTTCACTTTCTGACGTTGTTCCTCAGCAGGCTAACAAAAACTATTGTGGGTTGCTGGAAAGTTTAATGAGTCCAGACGCGGAATATACTGTGGCTATTACAGCATTTTGGGCTATTGAAACGGTGTATCAAGAGAGCTTTGCCCACTGCATTGAAGAAGGCTCCAAAACCCCACCAGAACTGAAGGAGACTTGTGTAAGATGGGGCAATGAGGCCTTTGGTAAGTATTGCCAATCTCTGCAGAACATTGCCAATAGATGCTTGCAAAAGGCTTCTGATGAAGAACTCAAAAAGGCTGAAGTTATGTTGCTAAGTGTCCTTGAGCATGAAGTTGAATTCTGGAACATGAGCCGTGGAAATGTCTGA

Predicted protein sequences of Glyma17g03600

Limit To All Plant Sequences

>Glyma17g03600.1   sequence type=predicted peptide   gene model=Glyma17g03600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKAKAEQKKIGMTETWLKKHRLLYNGATRHPLIISIRDGTINTASFKTWLAQDYLFVRAFVPFVASVLIKAWKESDCSGDMEVILGGMASLEDEISWFKTEANKWGISLSDVVPQQANKNYCGLLESLMSPDAEYTVAITAFWAIETVYQESFAHCIEEGSKTPPELKETCVRWGNEAFGKYCQSLQNIANRCLQKASDEELKKAEVMLLSVLEHEVEFWNMSRGNV*

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