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Report for Sequence Feature Glyma17g03540

Feature Type:gene_model
Chromosome:Gm17
Start:2364291
stop:2366856
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02080AT Annotation by Michelle Graham. TAIR10: secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193 SoyBaseE_val: 2.00E-135ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG0077 KOG Vesicle coat complex COPII, GTPase subunit SAR1 JGI ISS
PTHR11711Panther ARF-RELATED JGI ISS
PTHR11711:SF12Panther SIMILAR TO ADP-RIBOSYLATION FACTOR 1 JGI ISS
PF00025PFAM ADP-ribosylation factor family JGI ISS
UniRef100_C6SZI8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZI8_SOYBN SoyBaseE_val: 6.00E-140ISS
UniRef100_G7IMU5UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein SAR1A n=1 Tax=Medicago truncatula RepID=G7IMU5_MEDTR SoyBaseE_val: 5.00E-135ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g03540 not represented in the dataset

Glyma17g03540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g37070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g032100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g03540.1   sequence type=CDS   gene model=Glyma17g03540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTTCTTCGATTGGTTCTATGGCATTCTAGCTTCCCTCGGTCTCTGGCAGAAAGAAGCCAAAATTCTCTTCCTCGGTCTCGATAATGCAGGGAAGACCACCCTCCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCACCAGCCGACCCAACACCCCACTTCGGAGGAATTGAGCATTGGGAAGATCAAGTTTAAGGCTTTTGATTTGGGGGGCCATCAAGTTGCCCGCAGAGTCTGGAAAGACTATTACGCAAAGGTGGATGCAGTAGTTTACCTGGTTGATGCCTTTGACAAAGAGAGGTTTGCAGAATCAAAGAAGGAGCTTGATGCCTTACTTTCAGATGAATCATTGGCAAATGTTCCATTTCTTGTGCTAGGCAACAAGATTGACATTCCATATGCTGCATCAGAAGAAGAGCTACGTTATCATCTAGGCCTGACCAATTTCACCACAGGGAAGGGGAAGGTCAACATCACGGAGTCGAACCTTCGGCCACTAGAAGTGTTCATGTGCAGCATTGTCCGCAAGATGGGATATGGAGATGGCTTCCAGTGGGTCTCTCAATATATTAAGTAG

>Glyma17g03540.1   sequence type=predicted peptide   gene model=Glyma17g03540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKVDAVVYLVDAFDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNITESNLRPLEVFMCSIVRKMGYGDGFQWVSQYIK*







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