Glyma17g03510 - SoyBase

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Report for Sequence Feature Glyma17g03510

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2349225
stop:	2357540
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16150	AT	Annotation by Michelle Graham. TAIR10: calmodulin binding;transcription regulators \| chr4:9148225-9153048 FORWARD LENGTH=923	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
KOG0520	KOG	Uncharacterized conserved protein, contains IPT/TIG domain	JGI		ISS
PTHR23335	Panther	IQ CALMODULIN-BINDING MOTIF PROTEINS	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
PF03859	PFAM	CG-1 domain	JGI		ISS
UniRef100_G7JMT3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding transcription activator n=1 Tax=Medicago truncatula RepID=G7JMT3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F223	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F223 related cluster n=1 Tax=unknown RepID=UPI000233F223	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03510

Paralog	Evidence	Comments
Glyma07g37090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g031900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03510

Limit To All Plant Sequences

>Glyma17g03510.1   sequence type=CDS   gene model=Glyma17g03510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATAACTTAGCGGCGCAACAACTGGTTGGTTCAGAGATACATGGATTCCACACATTGCAAGATTTGGATGTGGGGAGCATTATGGAGGAAGCAAGAACCAGATGGCTCCGTCCCAATGAGATTCATGCCATGCTTTGTAATTACAAGTATTTTACCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTCCGTAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACCGTTAAAGAAGCTCATGAGCACCTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGCCAGGATAACCCAAATTTTGTCCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTACCGTGAAATACAGGAGATGCAAGGTTCTCCCGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCATGGATTTTATCAGAAGAAATAGATTCAGGAACCACAACTGCATATGCTGGTGACACGAGTGCCAATATAAATGTCAAAAGTCATGAACTCAGACTTCATGAGATTAATACACTTGATTGGGATGACCTGGTGGATGCAAATGATCATAACACAACTACTGTGCCTAATGGAGGTACTGTTCCATATTTTGATCTACAAGATCAAATTTTACTGAATGACAGTTTCAGCAATGTAGCCAACAATCTATCTGCAGACATTCCTTCTTTTGGTAGTCTCACTCAGCCTATTGCTGGGAGCAACAGTGTTCCTTACAATTTTTCAAGTGTTAATCTTCAGACGATGGACGATCAAGCAAATCCACATGAGCAGAGGAATAATACAGTTTCCTTAAGTGGTGTTGATTCCTTGGACACTTTGGTCAATGATAGATTGCAAAGTCAGAACAGCTTTGGAATGTGGGTAAACCCCATCATGTCTGATTCACCATGTTCAGTAGATGACCCAGCTCTTGAATCCCCAGTTTCATCCGTTCATGAACCATATTCATCTCTGATAGTGGATAGTCAGCAATCTTCTCTGCCAGGACAAGTATTTACTATCACTGATGTATCCCCTACATGCGTATCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTTTTTCATAAGGACTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGTGTTCCTGCAGAAATTGTTCAGGTTGGGGTCTACCGGTGCTGGGTATCACCACATTCTCCAGGATTCGTGAATCTCTACATGAGCATTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCCTGCTTTGCATGATCCCGCCGTTTCAATGGAAGAGAGTGACAATTGGGATGAGTTTCAACTACAAATGAGGCTTGCATATTTGCTCTTTAAACAATTGAACCTTGATGTTATCTCCACTAAAGTATCACCCAATAGACTTAAAGAGGCTAGACAATTCGCCCTCAAAACATCATTTATTTCCAATAGTTGGCAATACTTAATCAAGTCAACTGAAGACAACCAAATTCCATTTTCACAAGCAAAAGATGCTCTATTCGGAATTGCATTGAAAAGCAGACTAAAGGAATGGCTTTTGGAAAGAATTGTTTTAGGCTGCAAGACTACTGAATATGATGCTCATGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGGATATACTTGGGCTGTTTCCTTGTTTTCATGGTCAGGCTTGTCATTGGATTTCCGTGATAGGTCTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCGAAGCCAAATTTGGTCACTGATCCTACTCCCCAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCACTTCAATGACATGAGCTTAGCTGGAAATATCAGCGGCTCACTTGAAACTAGCACGACTGATCCGGTAATTTCTGCAAACCTTACGGAGGACCAGCAGAACCTGAAGGATACATTGGCAGCTTACCGAACTGCTGCTGAGGCAGCTTCCCGCATACATGCTGCATTTAGGGAACACTCTCTAAAACTGAGAACTAAGGCGGTTGCATCTTCCCATCCAGAGGCTCAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTTAGGAACCACAAGACAAAGAAAGTGATGGCAGCTGCTGCTCGCATACAGTGTACATACCGTACATGGAAGATTCGTAAAGAATTTCTCAACATGCGTTGTCAGGCTGTTAAAATTCAAGCTGCGTTCCGGTGCTTTCAAGTGCGGAAGCATTATTGCAAAATTCTTTGGTCTGTTGGTGTCGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGTTTCCGTGGGCTCCAGGTCAAAACTGTCGAAGCGGGAACTGGAGATCAGGATCAGCAAAGTGATGTAGAGGAGGAATTCTTCCGGGCTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTGGTACGTGTGCAGGCTATGTTCCGTTCGAAGAAAGCACAAGAAGAGTACAGGAGGATGAAATTGGCCCTTGATCAAGCAAAGCTTGAGCGAGAATTCGAACGACTTCTTAGTACTGAAGTTGACATGCAACTGAAGACATAG

Predicted protein sequences of Glyma17g03510

Limit To All Plant Sequences

>Glyma17g03510.1   sequence type=predicted peptide   gene model=Glyma17g03510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNLAAQQLVGSEIHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYREIQEMQGSPVTPVNSHSSSVSDPPAPWILSEEIDSGTTTAYAGDTSANINVKSHELRLHEINTLDWDDLVDANDHNTTTVPNGGTVPYFDLQDQILLNDSFSNVANNLSADIPSFGSLTQPIAGSNSVPYNFSSVNLQTMDDQANPHEQRNNTVSLSGVDSLDTLVNDRLQSQNSFGMWVNPIMSDSPCSVDDPALESPVSSVHEPYSSLIVDSQQSSLPGQVFTITDVSPTCVSSTEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGVYRCWVSPHSPGFVNLYMSIDGHKPISQVVNFEYRTPALHDPAVSMEESDNWDEFQLQMRLAYLLFKQLNLDVISTKVSPNRLKEARQFALKTSFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKSRLKEWLLERIVLGCKTTEYDAHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRSGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDPVISANLTEDQQNLKDTLAAYRTAAEAASRIHAAFREHSLKLRTKAVASSHPEAQARKIVAAMKIQHAFRNHKTKKVMAAAARIQCTYRTWKIRKEFLNMRCQAVKIQAAFRCFQVRKHYCKILWSVGVVEKAVLRWRLKRRGFRGLQVKTVEAGTGDQDQQSDVEEEFFRAGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALDQAKLEREFERLLSTEVDMQLKT*

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