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Report for Sequence Feature Glyma17g03490

Feature Type:gene_model
Chromosome:Gm17
Start:2325202
stop:2333572
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g03490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16144AT Annotation by Michelle Graham. TAIR10: associated molecule with the SH3 domain of STAM 3 | chr4:9138053-9141422 REVERSE LENGTH=507 SoyBaseE_val: 0ISS
GO:0006897GO-bp Annotation by Michelle Graham. GO Biological Process: endocytosis SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0044090GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of vacuole organization SoyBaseN/AISS
GO:0046907GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular transport SoyBaseN/AISS
GO:0070536GO-bp Annotation by Michelle Graham. GO Biological Process: protein K63-linked deubiquitination SoyBaseN/AISS
GO:0071108GO-bp Annotation by Michelle Graham. GO Biological Process: protein K48-linked deubiquitination SoyBaseN/AISS
GO:0090316GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of intracellular protein transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG2880 KOG SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain JGI ISS
PTHR12947Panther AMSH JGI ISS
PF01398PFAM Mov34/MPN/PAD-1 family JGI ISS
UniRef100_G7JMQ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: STAM-binding protein n=3 Tax=Medicago truncatula RepID=G7JMQ8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0001B63BD6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B63BD6 related cluster n=1 Tax=unknown RepID=UPI0001B63BD6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g03490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03490
ParalogEvidenceComments
Glyma07g37130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g031700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g03490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g03490
>Glyma17g03490.1   sequence type=CDS   gene model=Glyma17g03490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATCGACTTGGATTCGATCGCTCGCCGAGTCGAGGTTGATAATCGCATTCCCATCCGCTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAACTATCTACCGGGAGGAGCATAATGTAGTTGACTTGTACATCATTCTCCTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCATATCATCGAGATTATCAAGCTTCACTGCCCAATGAAAGAGCAGCATATAAGAAGAGATCGCGAGCTGTGTTGGATGAGCTTGAATCTTTGAAGCCCGAATTTAAACTCCGGGTGGAAAAAATGAATGACTCACATGTAAAAGCTCTATTGCCTGAAGAAAATGGTTTCAATAAGGCTTTGCAGAGTTCAGTGAATTCATCTTTGCAATGGCCGGCTGTCAATAAACAGCCTGCTGCGGGATTCAGTTCACAGTCTTCATGGAATTATGATAATATGTTATCTTTAGATTCCTGGCCTATTGACAAGCAGTTTCAGAAACTATCTGTTAGTCTACCCCCTCCAAATAAGGAGACTTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGACCTAGTGCGGAAATAAAGGTTCAATATCCAAGCAGTGGTGAGCTCACACAGGCCAAGGATTCAAGCCCGAATCAGGCTGGGCTATATGATCTTGTGGCAATTAAAGATGGCGATCAAGGACCAGTTACATCCACAATGGACTCAGTTCTCTCTTTGGATGATGGAAGATGGTTGCGTCCTGCTGTGGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACCCCTTACAATTGCTCAACATCAAGCAACCTTTGCCGCCTCCTATTCTTGCTCAGGTGTATCCAGAACGTGTCCCCATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAGCTAAATCGTCTCATGATTCTAGACTTGATGCAACTACATATCAACACCTACATATACCTGTCAAAATGATGGAAGAGTTTTTAAGATTGGCTTCGGAAAACACAAGGAAAAACTTGGAGACATGTGGTGTTCTTGCAGGGTCCCTGAAAAAAAGGGTATTTCATATCACAACACTTATAATCCCAAAGCAAGAATCAACTTCAGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTAGGTTGGATACATACACACCCATCTCAGACTTGTTTCATGTCTTCTGTGGATCTACACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACTACAAGTCCACATGGCATATTTCATCTGTCTGATCCGGGTGGTGTGTCTGTCATTCGTAACTGTCAGCAACGTGGATTTCATCCCCATGAGGAGCCTGAGGATGGAACTCCAATATATGAGCACTGTTCTCATGTCTATATGAATGCTAACTTGAAGTTCGATGTTGTTGACCTTCGAGAGCGATGA
Predicted protein sequences of Glyma17g03490
>Glyma17g03490.1   sequence type=predicted peptide   gene model=Glyma17g03490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIDLDSIARRVEVDNRIPIRYYYRIADNLLKQATIYREEHNVVDLYIILLRFLSLVSETIPYHRDYQASLPNERAAYKKRSRAVLDELESLKPEFKLRVEKMNDSHVKALLPEENGFNKALQSSVNSSLQWPAVNKQPAAGFSSQSSWNYDNMLSLDSWPIDKQFQKLSVSLPPPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSGELTQAKDSSPNQAGLYDLVAIKDGDQGPVTSTMDSVLSLDDGRWLRPAVESCSPVVTESREDPLQLLNIKQPLPPPILAQVYPERVPIPPSKVADPRPGPAKSSHDSRLDATTYQHLHIPVKMMEEFLRLASENTRKNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGTPIYEHCSHVYMNANLKFDVVDLRER*






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