Glyma17g03390 - SoyBase

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Report for Sequence Feature Glyma17g03390

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2262617
stop:	2265357
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16120	AT	Annotation by Michelle Graham. TAIR10: COBRA-like protein-7 precursor \| chr4:9116591-9119138 REVERSE LENGTH=661	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0046658	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04833	PFAM	COBRA-like protein	JGI		ISS
UniRef100_B9RZK6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein COBRA, putative n=1 Tax=Ricinus communis RepID=B9RZK6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338AC2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338AC2 related cluster n=1 Tax=unknown RepID=UPI0002338AC2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03390

Paralog	Evidence	Comments
Glyma07g37210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g030700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03390

Limit To All Plant Sequences

>Glyma17g03390.2   sequence type=CDS   gene model=Glyma17g03390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCCTCCGAAGCCACTGTTGCTACCTCGGCATAATCGCCGGGCTAGCAGTGTTCCTCGCAACGACGTCGTTCGCCGACGCGCAATCCTGCAACGGCATCCTCGTCTCATACGCCTACACCGGCGGCCTGCGGTTGCCGCCCAACGTCTCCGACTCGGCTAAGCAGCCGTACCGGTTCGAGTCGACGGTGACGGTTCTCAACAACGGCCTCGACGAGCTCAAGTCGTGGAAGGTCTTCGTTGGGTTCGACCACGACGAGTTGTTGGTCTCCGCCTCCAATGCTGTGCTCGCCGACGGCACCACCCTCCCCGCCGCCGTCGGAAACGGCACCGTCTTCGCCGGTTTCCCCATGACTGATCTCAAGACCGCCGTCGAAACCGCCGGCGACTTGACCCAGATGCAGGCTCAGATCGAACTCGTCGGCACCGTGTTCGGGGTGGCGCCGCCCAGTGTTCCGATGCCGAAATCCATCAACCTCGCCAATGATGGTTTCCTCTGTCGCAAATCCACCGCTCAAGGGAAGAATGCGAGTAGTGTGTGTTGCACGAGAGATCCCAAGTTCAAAACTAACATTACTACGGATGAAGAGTTTCTGCCACGTCAGAGTGGTGATCTTACCATTATGTATGATGTGATCAGAACTTATGATTCAAATTACTGGGCTGAGGTTACCGTTGCAAACCATAACCCACTTGGGAGGCTTGATAACTGGAGGTTGAGCTGGGACTGGATGAATGATGAGTTTATATATTCAATGAAAGGGGCTTATCCTTCGGTTGTGGATGCTTCTGATTGTCTCTTTGGTAAGCAAGGAACTTTCTATAGGGATCTTGACTTTGCCCTTGTGTTGAATTGTGAGAGAAGGCCAACCATAATTGATCTCCCTCCCACCAAGTTCAATGATTCCGACCTTGGGAAGATTCCCTTTTGTTGCCGGAATGGTACTATTTTGCCTCCGTCCATGGATCCTAGCATGTCTGCTTCGAGATTCCAAATGCAGGTCTTCAAGATGCCGCCGGCGCTTAACCGATCCCAGCTTTCGCCACCGCAGAACTGGAAGATAAGTGGCACACTCAACCCTGACTATGAATGTGGCCCTCCAGTAAGAGTGAGTCCTACCGAAAATCCTGACCCGTCCGGCTTACCTTCAAACAAAACTGTGATGGCCAGTTGGCAGGTTGTGTGCAACATAACAACAGCCAAGAGAACATCAAGTAAATGCTGTGTCTCGTTTTCATCTTATTACAATGATTCAGTTATTCCATGCAAAACATGTGCTTGTGGATGCCCCAAGAACACAGAGAGAACATGTAGTACTAGTGCTCCAGCTATGTGGCTTCCACCAGAGGCACTTCTTGTTCCCTTTGTGAACCGAACTGCCAAGGCTGTTGCTTGGGCAAGTCTGAAACATCTCCGGGTGCCAAACCCATTGCCGTGTAGCGATAACTGTGGTGTGAGCATCAATTGGCATTTGTACACAGACTACACTAAAGGATGGAGTGCAAGGGTGACACTTTTTAACTGGGGTGACACTAATTTTGCAGACTGGTTTGCCGCAGTACAAATGGACAAAGCAGCTTCGGGTTTTGAGAAAATGTATTCATTCAATGCAACTCTTCTAGATGGTGTAAACAATACAATAATCATGCAAGGTTTGCCAGGATTGAACTACCTTGTAGCAGAAGCAGATGGAGCTGACCCTTTGAGAGATCCTAGGGTGCCTGGTAAACAACAATCAGTTATCTCATTTACAAAGAAAACTACTCCTGGAATCAACGTAGCTCGTGGAGATGGGTTTCCCACTAAGGTATTTTTCAATGGCGAAGAATGTTCTCTTCCTTCAGTGTATCCAAGCAGTAGTGGTTTCAGGAATGGTTTTTCATTGGCTACTTCCTTGCTTCTAACACTGTTGATGATCCTCTTGATGCGGTAA

Predicted protein sequences of Glyma17g03390

Limit To All Plant Sequences

>Glyma17g03390.2   sequence type=predicted peptide   gene model=Glyma17g03390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLRSHCCYLGIIAGLAVFLATTSFADAQSCNGILVSYAYTGGLRLPPNVSDSAKQPYRFESTVTVLNNGLDELKSWKVFVGFDHDELLVSASNAVLADGTTLPAAVGNGTVFAGFPMTDLKTAVETAGDLTQMQAQIELVGTVFGVAPPSVPMPKSINLANDGFLCRKSTAQGKNASSVCCTRDPKFKTNITTDEEFLPRQSGDLTIMYDVIRTYDSNYWAEVTVANHNPLGRLDNWRLSWDWMNDEFIYSMKGAYPSVVDASDCLFGKQGTFYRDLDFALVLNCERRPTIIDLPPTKFNDSDLGKIPFCCRNGTILPPSMDPSMSASRFQMQVFKMPPALNRSQLSPPQNWKISGTLNPDYECGPPVRVSPTENPDPSGLPSNKTVMASWQVVCNITTAKRTSSKCCVSFSSYYNDSVIPCKTCACGCPKNTERTCSTSAPAMWLPPEALLVPFVNRTAKAVAWASLKHLRVPNPLPCSDNCGVSINWHLYTDYTKGWSARVTLFNWGDTNFADWFAAVQMDKAASGFEKMYSFNATLLDGVNNTIIMQGLPGLNYLVAEADGADPLRDPRVPGKQQSVISFTKKTTPGINVARGDGFPTKVFFNGEECSLPSVYPSSSGFRNGFSLATSLLLTLLMILLMR*

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