Glyma17g03380 - SoyBase

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Report for Sequence Feature Glyma17g03380

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2255155
stop:	2259564
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16110	AT	Annotation by Michelle Graham. TAIR10: response regulator 2 \| chr4:9112979-9115785 FORWARD LENGTH=664	SoyBase	E_val: 0	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of seed germination	SoyBase	N/A	ISS
GO:0010119	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0031537	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process	SoyBase	N/A	ISS
GO:0048831	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of shoot development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR26402	Panther	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	JGI		ISS
PTHR26402:SF38	Panther		JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_B9RZK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sensor histidine kinase, putative n=1 Tax=Ricinus communis RepID=B9RZK5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MRN2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRN2_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma17g03380

Locus	Gene Symbol	Protein Name
	RR19	Root Preferential, Response Regulator Type-B

Expression Patterns of Glyma17g03380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03380

Paralog	Evidence	Comments
Glyma07g37220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g030600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03380

Limit To All Plant Sequences

>Glyma17g03380.1   sequence type=CDS   gene model=Glyma17g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCTCAGCAACGGAAAGGGATCCATGTCAACGCTTACTGCAAGCGTCGTTATGAAATCCGGCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTTCTCGTGGTGGACGATGACCCCACGTGTCTCATGATTCTTGAGAAGATGCTCCGCACGTGCCTCTACGAAGTTACCAAATGCAATCGAGCAGAAACTGCTCTCTCACTGCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCGGACATGGATGGATTTAAACTTTTGGAGCACATTGGGTTAGAGATGGACCTTCCTGTTATCATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGCGTGACTCATGGTGCTTGTGATTACTTAATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCACGTGGTTCGGAAGAGGAAGAATGAGTGGAAAGATGCCGAGCAATCAGGCAGTGCCGAAGAAGGAGATCGCCATCCAAAGGCTTCTGATGAAGCAGATTACTCTTCATCGGCGAATGAAGGCAGTTGGAGAAACTCCAAGAAGAGAAGGGATGAGGAAGAGGAGGCAGAGGATAGGGATGACACATCCACGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTGGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGAGTGTCTCAGCACCAGAATAACTTGAACAACTCCTTTCTCGGCCCCCAAGAGGCAACATTTGGGACAATTTCTTCAATTAATGGGATTGATCTTCAAACTCTTGCAGTCGCTGGCCAGCTCCCAGCACAAAGTCTAGCCACACTTCAAGCAGCAGGACTTGGTAGGTCGACTGCAAAAGCTGGTGTACCTATTCCTCTCATGGATCAAAGAAATCTTTTCAGTTTTGAAAACCCAAGGTTAAGATTTGGAGAAGGCCAGCCACAACATTTAAGCACTAGTAAACCAATGAACTTGTTGCATGGAATCCCTACCAACATGGAACCAAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGGCGGCTTGAATATGCGAGTCAATGCTTCTGCTACACAAGGCAACCCCATATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTTAGTGAAAATACTGGTCCTCGTGTTCCAAGACTTCCATCATCTTTGGGGCAGCCTACTGTATCAAATGGAATTTCTAATGGTCTTCTGGGCAGAAATGGGATTGCGGGTAATAACAGAGGACCTGCATATAATCCTGTTCCACCGAGCTCTTCATTGTTGAGTTTTCCTATGAATCAAACCTCTGAAATGTCTGTCAACAATAGTTTCCCAATTGGAACCACCCCAGGTATATCAAGTATCACAACAAAAGGCTCTTTTCAAGAAGAAGTTACATCAGGAATTAAAGGATCCAGTGGGTTTCCAAGTTATGATATTTTTAATGAACTGCATCATCAGAAGTCCCATGATTTGGAGATAACAAACCCAGGCTTGACATACAATGCCTCCCATCATGTAAACCCTTTACAAGGTAACATTGATGTTGCACCATCAGTTTTAGTGCATCAAGGGTTTTCTTCTACACAACAGACCGGCCAAAGCAGAGATGGCGCTTTGATTGGAAAAGCTATGTTCTCCATGGGAGAAGGCTTGGAACAAAATAACCTCCAAAATGCTAACTTCAATCCACTTCTTGTTGACAATTCAATAAGGATCAAGGCTGAAAGAATTCCTGATGCAAGCTCCCAGACTAATCTCTTCCCTGAGCATTATGGGCAGGAGGATCTGATGACTGCACTTCTAAAACAGCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCTCTAGACAACATTCCTGTCTAG

Predicted protein sequences of Glyma17g03380

Limit To All Plant Sequences

>Glyma17g03380.1   sequence type=predicted peptide   gene model=Glyma17g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLSNGKGSMSTLTASVVMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRHPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPIPLMDQRNLFSFENPRLRFGEGQPQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGGLNMRVNASATQGNPILMQMAQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPIGTTPGISSITTKGSFQEEVTSGIKGSSGFPSYDIFNELHHQKSHDLEITNPGLTYNASHHVNPLQGNIDVAPSVLVHQGFSSTQQTGQSRDGALIGKAMFSMGEGLEQNNLQNANFNPLLVDNSIRIKAERIPDASSQTNLFPEHYGQEDLMTALLKQQEGMGPAENEFEFDGYSLDNIPV*

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