Report for Sequence Feature Glyma17g03320
Feature Type: gene_model
Chromosome: Gm17
Start: 2207249
stop: 2208916
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g03320
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G08570 AT
Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr4:5455123-5455975 REVERSE LENGTH=150
SoyBase E_val: 1.00E-11 ISS
GO:0030001 GO-bp
Annotation by Michelle Graham. GO Biological Process: metal ion transport
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0046872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion binding
SoyBase N/A ISS
KOG1603
KOG
Copper chaperone
JGI ISS
PTHR22814 Panther
COPPER TRANSPORT PROTEIN ATOX1-RELATED
JGI ISS
PTHR22814:SF35 Panther
PUTATIVE UNCHARACTERIZED PROTEIN P0551A11.11 (PUTA
JGI ISS
PF00403 PFAM
Heavy-metal-associated domain
JGI ISS
UniRef100_I1MRM3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRM3_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8L4I2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: OJ1116_C07.8 protein n=2 Tax=Oryza sativa RepID=Q8L4I2_ORYSJ
SoyBase E_val: 1.00E-18 ISS
Expression Patterns of Glyma17g03320
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g03320
Paralog Evidence Comments
Glyma07g37300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g03320 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g029900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g03320
Coding sequences of Glyma17g03320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g03320.1 sequence type=CDS gene model=Glyma17g03320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCGGGATTCACAGGCACCTCGTGTCACGCAAATACAGGTCCGAGTGGACTGCAAAGGGTGCGTGCAGAAGATAAAAAAAACACTAAATGGAATTCATGGTATACATGATCTTCGTGTTGACCTACTTCAACAAAAGCTCACAATTATTGGGTGGGCAGATCCAGAACAAGTTGTCAAAGCAATTAAGAAGACAAAAAAAAATGCCACCATTTGCTCTAGTATTGAACTAACGTCTCCATCTAAACCAACTGAACCAGAGCCAAAAGAAAATGCACCAGTCCCTGATGCAACACAACCACCACCAGCACGAGTTCCACCACCTCAAGCAAGCCCACCATCAAAACCACCGCCTCAACGGCCACCACCTGAAGCAACACCACCATCGCACATACCTACACAGCACAAGACAAGCCGGCAGTGGCAGAACAACACAGGAATTGAAGAATTAGAACAGGTTCATGTGAAGCAATACTATCATCTGCCTAACAACGTTAACAGATTCAGTTCTGGCCGCAACCATGTTGAACACTGGCACAGATACCATAATGGCCCTGTATTTCTACAAGAGTCATCCCGACCCATGTATGTGACACACAGCTATAACACACACGTGCCTTCGTCAATCGTCACTGAATATGAATACGTCAGATCACCATCCAGACAAACACATTACAATTGTATAGAACACTACAGTGGAGATTACCAGAACGACAATGTAAACATCACATCCATGTTCAGCGATGATAATCCCAATGCATGTTGCATTGTCTAG
Predicted protein sequences of Glyma17g03320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g03320.1 sequence type=predicted peptide gene model=Glyma17g03320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MARDSQAPRVTQIQVRVDCKGCVQKIKKTLNGIHGIHDLRVDLLQQKLTIIGWADPEQVVKAIKKTKKNATICSSIELTSPSKPTEPEPKENAPVPDATQPPPARVPPPQASPPSKPPPQRPPPEATPPSHIPTQHKTSRQWQNNTGIEELEQVHVKQYYHLPNNVNRFSSGRNHVEHWHRYHNGPVFLQESSRPMYVTHSYNTHVPSSIVTEYEYVRSPSRQTHYNCIEHYSGDYQNDNVNITSMFSDDNPNACCIV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
