Report for Sequence Feature Glyma17g03310
Feature Type: gene_model
Chromosome: Gm17
Start: 2199774
stop: 2207217
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g03310
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G11240 AT
Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr5:3582949-3586782 FORWARD LENGTH=615
SoyBase E_val: 0 ISS
GO:0000478 GO-bp
Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009220 GO-bp
Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process
SoyBase N/A ISS
GO:0009909 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of flower development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
KOG4547
KOG
WD40 repeat-containing protein
JGI ISS
PTHR22847 Panther
WD40 REPEAT PROTEIN
JGI ISS
PTHR22847:SF201 Panther
OS03G0300300 PROTEIN
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
PF04003 PFAM
Dip2/Utp12 Family
JGI ISS
UniRef100_G7JLK9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WD40 repeat-containing protein SMU1 n=1 Tax=Medicago truncatula RepID=G7JLK9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233EC48 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EC48 related cluster n=1 Tax=unknown RepID=UPI000233EC48
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g03310
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g03310
Paralog Evidence Comments
Glyma07g37311 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g03310 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g029800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g03310
Coding sequences of Glyma17g03310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g03310.1 sequence type=CDS gene model=Glyma17g03310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AACCCGATCCGACCCGACACAAAACTTGTTTTGTTTCCCTCTCTTGCTGCGAACGGGAACCCTTTCTCGTTTCGTTCCTCTTTGCAAGCTTCAGCTGTTGGTTCGGGTATGGCTTCAACGGACGTCAGAGACATTTTGACAGCTTTCAATCCTTCACTCGACTTCTTCGCTATTACCGCCGGAGACGGTCGCGTCAAGATATGGGACACACTGAGGGGTCAGGTCCACACCGAGTTCGCCGATATTACCTCAACTCATTCAACTGCTACTACTTTACATCATAAATCATCCATTAACGGCCATCTTGCGCTAGATTATACTTGCATCAAGTGGTTCTCCTTCGACAAAAAGAGGAAAAGGAAGCATATATCCTCCTTGTTAGTGCTTGGAACTGGTGGCGGTGATGTTTTAGCACTTGACATCGCTTCTGGTCAATTGACTTGGAGACTTACTGACTGTCATCCTGGAGGTGTGAGAGCCATTGCATCTTCAGCAAATGTGTCAACCATTTATACGGCTGGTGCAGATGGGATGGTATGTTTGATAGATTTCATGACAGGAAACCTGTTGGAGAAATTTAAAGCTTCTACAAAGCCAGTATCCTGCATGTCTGTTTCTCCAGATGGGAAGACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTCGATGCATGGTTTTCACTGAAGATGGGAAGCATATCCTCTCATCTGCTGTTGGTGAAAGATATGTTGCTGTTTGGAGGATAGAGGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCGATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAGTGAGGAACATGATGAGGCTGGCATATGTGTTTTGGCAATCTCAGAAATTGGCATTTGTTATTTATGGTTTGGTAATAGTGTCGAAGAACTGCGTAATGCAAAACCCACTAAAATATCCTTATCTTTAGAAGATGTGCCCTCCAGAAACTACAAGGGAGCTCTGCCTGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAAGTTTTTCTTGTTTATGGGTTGCTTGTAAAACCATCATTTAGAAAAATTCTTGTGCATTCTGGTGCGGACATAAAGTTGAATGTCTCTCATGATGGTGTTCTTCTTCCAATGAGTCAATCTCTTGGCAAATCTAAGAAGGGGACAAATGCTCAAACAGTAACTGCACTAGACCGAGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGGTTTTTGATTCTCATGAGAAAGAGAAAGCATTTCAAAAATCTCTGGACAAGGATGTAATTGATGATTTGCATAGAAGTAGTAAAGATGATTCTGTTGAGATGGAAGATGATATGGCACAAAGTGAGATTGATGTAATTTGCATGGAGGACCGGATGAGATCACTAGGGATGATTTCCAGTGAAAGTGTGTATGCATCAAACATTGAACTTTGCTGTAAGTTGTTGAAGGGTATTGATCTGGAAGCTACTGTTCCAATGAAAAAGATAAGAGCAGCTGTTTTGTCTATGAAGTCAACCAAAGCAGGGAAGCTACTGGAAGTGTTACTGGCTGCATGGGAATCAAGATCATCTAGTGGAAAGTATATTCTTCCATGGATATACAGCATATTAGTGAATCATGATCTCAGTGGCATTCCTCAGCAATATGTGACACGTACACTCAATTCCTTAGACAAGATTACCAATTTTAGAGGGGCAACTCATCAGCCTTTGTTACAATTATCAGGTCGTCTGCAACTGCTGACATCACAGATTGACAAGGCTTCTCAGACTATAAGCCATTCTGTGCATGAACTCCAAATGCAAGAAAGTGAAGATGAAGATGAAGTTGAAGTTGAAGATGAATATTATCACGAGGAAGATGATTCTTCTGAAATAAGTACTGATGATGAAAGCTAG
Predicted protein sequences of Glyma17g03310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g03310.1 sequence type=predicted peptide gene model=Glyma17g03310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
NPIRPDTKLVLFPSLAANGNPFSFRSSLQASAVGSGMASTDVRDILTAFNPSLDFFAITAGDGRVKIWDTLRGQVHTEFADITSTHSTATTLHHKSSINGHLALDYTCIKWFSFDKKRKRKHISSLLVLGTGGGDVLALDIASGQLTWRLTDCHPGGVRAIASSANVSTIYTAGADGMVCLIDFMTGNLLEKFKASTKPVSCMSVSPDGKTLATAAAQLKIFNCSNHKKIQKFSGHPGSVRCMVFTEDGKHILSSAVGERYVAVWRIEGAKKQSASCVLAMEHPAVFLDSRCIDSEEHDEAGICVLAISEIGICYLWFGNSVEELRNAKPTKISLSLEDVPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVSHDGVLLPMSQSLGKSKKGTNAQTVTALDRANAEDALLPIPKVFDSHEKEKAFQKSLDKDVIDDLHRSSKDDSVEMEDDMAQSEIDVICMEDRMRSLGMISSESVYASNIELCCKLLKGIDLEATVPMKKIRAAVLSMKSTKAGKLLEVLLAAWESRSSSGKYILPWIYSILVNHDLSGIPQQYVTRTLNSLDKITNFRGATHQPLLQLSGRLQLLTSQIDKASQTISHSVHELQMQESEDEDEVEVEDEYYHEEDDSSEISTDDES*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
