Glyma17g03300 - SoyBase

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Report for Sequence Feature Glyma17g03300

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2195858
stop:	2198733
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06770	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr3:2135119-2137033 REVERSE LENGTH=446	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
UniRef100_B9RTB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RTB3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MRM1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRM1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03300

Paralog	Evidence	Comments
Glyma07g37320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g029700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03300

Limit To All Plant Sequences

>Glyma17g03300.1   sequence type=CDS   gene model=Glyma17g03300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGTGGCATTGCTCTTGCTGCTGGCGTTGAGCAATGAAGTTCGAGTTAATGGTGATAGCGATGGTAGACAATGTGAGGTTAATCCAGCACTAAAGCCAAGACCACACACTGTCTCCATCTTGGAGTTTGGTGCGGTTGGGGATGGTAAAACATTGAACACTATTGCATTCCAGAATGCCATTTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATATGTGCCACCCGGAACATGGTTGACTCAAAGTTTCAATCTTACTAGCCATCTCACACTTTTCTTGGAAAAAGGTGCTGTAATTCTTGGATCTCAGGATCCATTTCACTGGGAAGTTGTTGATCCATTACCTTCTTATGGCAGAGGAGTTGAAGTTCCCGGGGGAAGATATCAGAGTTTAGTTAATGGATACATGTTACATGATGTGGTGATAACAGGTAATAATGGAATCATTGATGGCATGGGATTGGGTTGGTGGGAATTGTTTAGTTCCCATTCCCTGAACTACAGCCGTCCACATCTGATTGAATTAGTGGCATCTAATCGCGTGGTAGTTTCAAATCTTACATTCTTGAACGCTCCTGCATATAGTATTCACCCAGTTTATTGCAGCAATGTACATATTCACAATGTTTCAATTTCTGCTCCTCAAGAATCTCCTTATACCATTGGCATAGTACCAGATTCTTCTGATCATGTTTGTATAGAGGATTGTGTCATTGCAACGGGATATGATGCAATTTCACTCAAAAGTGGCTGGGACGAATATGGCATTGCCTATGGCAGGCCAACTGAGAATGTACACATCAGAAGGGTACATCTGCAGGCTTATTCTGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTCATCTTTACAACTCAAAGAGTGGCATTGAGTTCAGAACCATGAGGGGCAGAGGTGGTTATATGAAGGAAATCATCATATCAGACATAGAAATGGAGAATATATACACCGCTATGGCCGCCACAGGTTATTGTGGGTCTCATCCTGATGATAAATTTGACCCTAATGCTCTACCACTTTTGGACCACATTATTTTGCAAGATATGATTGGCACAAACATCACTATTGCTGGAAGCTTTGCTGGTCTTCAAGAATCTCCCTTCACTAACATATGCCTTTCCAACGTAACTTTGTCTATAAATTCTGTTTCTTCCATTCCTTGGGAATGCTCAAATGTCTCCGGATTTTCAGATTCTGTTCTTCCCAAACCATGTCCTGACCTTGAGACCCTTTCAGATTGTCTCTCCCTGCTCAGTATCAAGGGAAAAACCGCTGTCATGTGA

Predicted protein sequences of Glyma17g03300

Limit To All Plant Sequences

>Glyma17g03300.1   sequence type=predicted peptide   gene model=Glyma17g03300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVALLLLLALSNEVRVNGDSDGRQCEVNPALKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLVNGYMLHDVVITGNNGIIDGMGLGWWELFSSHSLNYSRPHLIELVASNRVVVSNLTFLNAPAYSIHPVYCSNVHIHNVSISAPQESPYTIGIVPDSSDHVCIEDCVIATGYDAISLKSGWDEYGIAYGRPTENVHIRRVHLQAYSGSTIAFGSDMSGGISNILVENVHLYNSKSGIEFRTMRGRGGYMKEIIISDIEMENIYTAMAATGYCGSHPDDKFDPNALPLLDHIILQDMIGTNITIAGSFAGLQESPFTNICLSNVTLSINSVSSIPWECSNVSGFSDSVLPKPCPDLETLSDCLSLLSIKGKTAVM*

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