Glyma17g03280 - SoyBase

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Report for Sequence Feature Glyma17g03280

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2179165
stop:	2180612
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06778	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr3:2140249-2141437 REVERSE LENGTH=229	SoyBase	E_val: 1.00E-54	ISS
PTHR24077	Panther	FAMILY NOT NAMED	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_D7L5Z7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L5Z7_ARALL	SoyBase	E_val: 2.00E-52	ISS
UniRef100_UPI000233F21B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F21B related cluster n=1 Tax=unknown RepID=UPI000233F21B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03280

Paralog	Evidence	Comments
Glyma07g37340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g029500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03280

Limit To All Plant Sequences

>Glyma17g03280.2   sequence type=CDS   gene model=Glyma17g03280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAATGGGAAAAGAATCAGACTCCAAGACCAAGTTGGTATTAGAGATTTGCTCCATTTCCACGCGTTCTGTGCTCTGTGTTCATCATACACTTCTCTCAAAACCTTTCATTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAATGCCATTCGCAAGAGGTACCATAAACTGGCCTTACAAGTTCACCCAGATAAGAATAAGCATCCCAATGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCATATGCATGTCTATCTAATGCAGCAAAGAGAAAAGCCTTTGACTTGGAGAGATGTAAGCATTTTTGCTTCGAGTGCAAAAGAATACCATATACATCGAGCAATGTCCCTGGCAATTCAAGTGGGTCAGTTTTCAAGGCATGGAATATGATCACCAGATCAAGATCTTTTAAACTTTGGAGAAATATTAGGGACATGAGAGAAAGATTCATGGACGAGGCTAAGGTGATAGAGAACTGTTTGCGAACAAATTCAATGTCAAGGAAAGAATCTCCACCCTATGATTCGGCTGGCTTTCTACATAGAAGCAAGTCAATGCATAGATTCGAGAAAGAAACCCCAGTTTTCAACCCATCGGATTACTTGTACCAAGGCTACCCTCATCTAAGGAGCAATATTTACAAGAATTCTTCAACATTTTGGTACTTGCAGAGAAATAGTATGCTTCACAACGAAAAGGGAGGAGCGTTGCATGCCTCCCCAGTTTTTGATGTCAAATCAAGGAATTTGTTTGCCAGCAAATTCACTTTTGTCCCATCAAAATGTTAG

Predicted protein sequences of Glyma17g03280

Limit To All Plant Sequences

>Glyma17g03280.2   sequence type=predicted peptide   gene model=Glyma17g03280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRMGKESDSKTKLVLEICSISTRSVLCVHHTLLSKPFIDWYCILGVEENAGVNAIRKRYHKLALQVHPDKNKHPNAEIAFKLVSEAYACLSNAAKRKAFDLERCKHFCFECKRIPYTSSNVPGNSSGSVFKAWNMITRSRSFKLWRNIRDMRERFMDEAKVIENCLRTNSMSRKESPPYDSAGFLHRSKSMHRFEKETPVFNPSDYLYQGYPHLRSNIYKNSSTFWYLQRNSMLHNEKGGALHASPVFDVKSRNLFASKFTFVPSKC*

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