Glyma17g03210 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g03210

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2146404
stop:	2150474
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16760	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:5703213-5705080 FORWARD LENGTH=475	SoyBase	E_val: 7.00E-117	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PTHR22904:SF163	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_B9RTA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTA1_RICCO	SoyBase	E_val: 7.00E-143	ISS
UniRef100_I1MRL3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRL3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03210

Paralog	Evidence	Comments
Glyma07g37420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g028900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03210

Limit To All Plant Sequences

>Glyma17g03210.1   sequence type=CDS   gene model=Glyma17g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCCAACTTCAATTTCGATTTCGATCTCGGCATCGGATCCAACCGTCCCAAATCTCTTAACGACCAGAAAAACCCCAAACCAACTTCCTCCTATTCCTCTGCCCAACCCGCATGGACCCACCGACCCGCCCCCACTCAGACCACCGCCTTGCCCGGTGGGCCCCCCTCCATGGTCGGAGACATCTTCGGCAAGAGTTGGGGAACCCCTCAACCTTCTTCCGCTTCCAAAAACATCGGGATCGTTAATAAGAACCCTAACCTTTTCGGAGATTTGGTAAGTTCTGCTCTGGGCCTGGGTTCCAAGACCAACGTTCCTCTCAAAAATGCTCCCGCGCCCAATAAAACAACAACCTTCTCAATGGGAAACATGGCTGATTCTTTGCCCAAAACAGGCTCCACGCCACAGAGCAGTGCTAGTTGGGCATCATCCTCTGGGGGTTTTAATGTCAATGCCAATAAAACCACTCCCAATCTTGGGGGTCCTTCATTGCGAAACATGGGCTCTGGAATCGGAACCAATTCTAATACTAACAAGGATCCCTTCAGTTCTCTGTCTGGTATTGGATCCAAGCAATCTTCTACTCTTAACTCAGCTGCTAAAGGACCAAAGGTTGATTTGGGGGACGATGGTTTTGGAGATTTTCAAAATGCTTCCAAACCCAGCTCCGCTGCGTTCCCATCCACTGCTTCTCCTGGAATTGATATCAATTTTACTAGATCTACTGCTGCTGCTGCTTCCAATCAGGGATCAGGTGGTGGTGGTGATCCAATGGACATGTTTTTCACGACGATTTCTTCCTCGGCCTCAGGTGAAGGTGCTGCTGCGGCCTCTGATGGATTTGGAGGACAGGACAATTGGGGTTTGGATTCGGAGTTTGGTGGGGGAGGCCAAGATGTGGGTGGCACCACTACTGAGCTTGAGGGGCTGCCTCCTCCTCCTGCTGGGGTCTCAGGCTCCACTGCCAAAGGCAAGGGGATGGACAGTTACAAGCAGGGACAGTTTGCCGATGCTATTAAGTGGCTTTCGTGGGCTGTCGTCCTTCTAGAGAAAGCTGGGGATAGTGCCACCACTGGGGAGGTTTTGTCGTCCAGGGCTTCCTGTTACAAAGAAGTTGGGGAGTATAAAAAGGCAGTGGCAGATTGTACAAAGGTTCTTGAAAATGATGAAACCAATGTATCTGTCCTGGTACAGCGTGCTCTGTTGTATGAGAGTATGGAAAAGTACAGACTTGGTGCTGAAGACCTTAGGACCGTGCTGAAGATTGATCCTGGTAATAGGATTGCTAGAGGCACCGTTCACCGGTTGGCTAAGATGGCTGATTAG

Predicted protein sequences of Glyma17g03210

Limit To All Plant Sequences

>Glyma17g03210.1   sequence type=predicted peptide   gene model=Glyma17g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSNFNFDFDLGIGSNRPKSLNDQKNPKPTSSYSSAQPAWTHRPAPTQTTALPGGPPSMVGDIFGKSWGTPQPSSASKNIGIVNKNPNLFGDLVSSALGLGSKTNVPLKNAPAPNKTTTFSMGNMADSLPKTGSTPQSSASWASSSGGFNVNANKTTPNLGGPSLRNMGSGIGTNSNTNKDPFSSLSGIGSKQSSTLNSAAKGPKVDLGDDGFGDFQNASKPSSAAFPSTASPGIDINFTRSTAAAASNQGSGGGGDPMDMFFTTISSSASGEGAAAASDGFGGQDNWGLDSEFGGGGQDVGGTTTELEGLPPPPAGVSGSTAKGKGMDSYKQGQFADAIKWLSWAVVLLEKAGDSATTGEVLSSRASCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALLYESMEKYRLGAEDLRTVLKIDPGNRIARGTVHRLAKMAD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain