Glyma17g03200 - SoyBase

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Report for Sequence Feature Glyma17g03200

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2143304
stop:	2144898
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06790	AT	Annotation by Michelle Graham. TAIR10: plastid developmental protein DAG, putative \| chr3:2144564-2145743 REVERSE LENGTH=244	SoyBase	E_val: 3.00E-95	ISS
GO:1900864	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial RNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
UniRef100_B9RTA0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DAG protein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RTA0_RICCO	SoyBase	E_val: 4.00E-100	ISS
UniRef100_I1MRL1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRL1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03200

Paralog	Evidence	Comments
Glyma07g37430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g028800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g03200

Limit To All Plant Sequences

>Glyma17g03200.2   sequence type=transcript   gene model=Glyma17g03200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAACATCTAGGCTGGGAAATGGCGTACCTAAACGCTCGGCGCACCTTAGCATATAGGCTGGCAGGAGCTCTGTCTTCGTCATCCGCAAGCGCGTCTCGCTGTCGCTTCGCATTGGCGTTGCACCACGCCAAACAAACCGTACCCATTCCTCACCCGGCGAGTTTTGCGGTTCGGACTCAATCTTCGGGTTCGGGTTACTCGCCCCTGAACGACCCCTCCCCGAACTGGAGCAACCGTCCCCCGAAGGAGACCATTCTTCTCGATGGCTGCGACTACGAGCACTGGCTCATCGTCATGGAGTTCCCCGATAACCCTAAACCCTCCGAGGACCACATGGTTAACTCCTATGTCAAAACCCTAGCTCAAGTCCTCGGAAGTGAGGAGGAGGCTAAAAAGAAGATATACTCTGTTTCCACTTCTACGTACACAGGTTTCGGCGCCCTCATTTCCGAAGAGCTTTCTTATAAAGTCAAAGGTGTCATTGATTCGTTACTTTGTTTATTTTATTCTTCATTTTGCTCGAAATTTGTAGCTGTTTGACTTGTTAGGGTTTTCTTATCAATGATGTTGTGCCACTATCAAATTGATTGCGAATCTCATCTTATAAGAATATTAATTAATGGAGGTTAATTTTATGGAAATACTTTCT

Coding sequences of Glyma17g03200

Limit To All Plant Sequences

>Glyma17g03200.1   sequence type=CDS   gene model=Glyma17g03200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTACCTAAACGCTCGGCGCACCTTAGCATATAGGCTGGCAGGAGCTCTGTCTTCGTCATCCGCAAGCGCGTCTCGCTGTCGCTTCGCATTGGCGTTGCACCACGCCAAACAAACCGTACCCATTCCTCACCCGGCGAGTTTTGCGGTTCGGACTCAATCTTCGGGTTCGGGTTACTCGCCCCTGAACGACCCCTCCCCGAACTGGAGCAACCGTCCCCCGAAGGAGACCATTCTTCTCGATGGCTGCGACTACGAGCACTGGCTCATCGTCATGGAGTTCCCCGATAACCCTAAACCCTCCGAGGACCACATGGTTAACTCCTATGTCAAAACCCTAGCTCAAGTCCTCGGAAGTGAGGAGGAGGCTAAAAAGAAGATATACTCTGTTTCCACTTCTACGTACACAGGTTTCGGCGCCCTCATTTCCGAAGAGCTTTCTTATAAAGTCAAAGAGTTACCTGGAGTTCTTTGGGTGCTACCAGATTCATATCTTGATGTTCCCAACAAGGATTATGGAGGTGATTTATTTGTTGATGGGAAAGTAATTCCTAGGCCACAGTATAGATATTCGGATAGGCAACCCAGTAGGAGTAGACCTCGGCCACGGCATGACAGACAGCGGCAAACAATGCAGGTTGAAAGGAGAGATCAACAGAACTGGAACCAAGGTCCGGGGGGATCTATGCAGCCATCCACTGCAATGAATAGCCAAAACTTTGTGTCCGGTGGAGAGTACTAA

>Glyma17g03200.2   sequence type=CDS   gene model=Glyma17g03200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTACCTAAACGCTCGGCGCACCTTAGCATATAGGCTGGCAGGAGCTCTGTCTTCGTCATCCGCAAGCGCGTCTCGCTGTCGCTTCGCATTGGCGTTGCACCACGCCAAACAAACCGTACCCATTCCTCACCCGGCGAGTTTTGCGGTTCGGACTCAATCTTCGGGTTCGGGTTACTCGCCCCTGAACGACCCCTCCCCGAACTGGAGCAACCGTCCCCCGAAGGAGACCATTCTTCTCGATGGCTGCGACTACGAGCACTGGCTCATCGTCATGGAGTTCCCCGATAACCCTAAACCCTCCGAGGACCACATGGTTAACTCCTATGTCAAAACCCTAGCTCAAGTCCTCGGAAGTGAGGAGGAGGCTAAAAAGAAGATATACTCTGTTTCCACTTCTACGTACACAGGTTTCGGCGCCCTCATTTCCGAAGAGCTTTCTTATAAAGTCAAAGGTGTCATTGATTCGTTACTTTGTTTATTTTATTCTTCATTTTGCTCGAAATTTGTAGCTGTTTGA

Predicted protein sequences of Glyma17g03200

Limit To All Plant Sequences

>Glyma17g03200.1   sequence type=predicted peptide   gene model=Glyma17g03200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYLNARRTLAYRLAGALSSSSASASRCRFALALHHAKQTVPIPHPASFAVRTQSSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPDNPKPSEDHMVNSYVKTLAQVLGSEEEAKKKIYSVSTSTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIPRPQYRYSDRQPSRSRPRPRHDRQRQTMQVERRDQQNWNQGPGGSMQPSTAMNSQNFVSGGEY*

>Glyma17g03200.2   sequence type=predicted peptide   gene model=Glyma17g03200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYLNARRTLAYRLAGALSSSSASASRCRFALALHHAKQTVPIPHPASFAVRTQSSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPDNPKPSEDHMVNSYVKTLAQVLGSEEEAKKKIYSVSTSTYTGFGALISEELSYKVKGVIDSLLCLFYSSFCSKFVAV*

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