Glyma17g03140 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g03140

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2111000
stop:	2119111
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11710	AT	Annotation by Michelle Graham. TAIR10: lysyl-tRNA synthetase 1 \| chr3:3702359-3705613 REVERSE LENGTH=626	SoyBase	E_val: 0	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006418	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation	SoyBase	N/A	ISS
GO:0006430	GO-bp	Annotation by Michelle Graham. GO Biological Process: lysyl-tRNA aminoacylation	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004812	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity	SoyBase	N/A	ISS
GO:0004824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lysine-tRNA ligase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1885	KOG	Lysyl-tRNA synthetase (class II)	JGI		ISS
PTHR22594	Panther	ASPARTYL/LYSYL-TRNA SYNTHETASE	JGI		ISS
PTHR22594:SF4	Panther	LYSYL-TRNA SYNTHETASE	JGI		ISS
PF00152	PFAM	tRNA synthetases class II (D, K and N)	JGI		ISS
PF01336	PFAM	OB-fold nucleic acid binding domain	JGI		ISS
UniRef100_I1L9B1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysyl-tRNA synthetase n=1 Tax=Glycine max RepID=I1L9B1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1L9B1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Lysyl-tRNA synthetase n=1 Tax=Glycine max RepID=I1L9B1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g03140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g028300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g03140

Limit To All Plant Sequences

>Glyma17g03140.3   sequence type=transcript   gene model=Glyma17g03140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGTGTAAGACTGATGTTTTGGGTGCATGTTCACCCAAGACTTTCTCCTGTAAACCGTTACCCTAAACCTTTCCAAAGTCTTGTAAGCCATTACTCACCCTAACGTTTTGCTCCGTTCGTAAGAACACTTCGACTTTGCCCTTCGCCTCGCCTCGCCTCGCCTCGCCTCCGATTTCCTTCTTTCTCCACCAATGGAAGTTCCTTCGGAGGTACCATCTACTGACACTGGCACCAGCACCGGCACCGGCGAAACCATGAGCAAGAATGCGTTGAAGCGGGAGCTGAAGAACAAACAGAGAGAAGAAGAAAGGAAGCGCAAGGATGAGGAGAAGGCCAAAAAGGCAGCTGAAGCACAACAGGCAAAGGATAACAAATCTGCACCAGCTGATGATGAGGATATGGATCCAACTCAATACCTTGAGAACAGGCTAAAGTATCTTGCAGTTCAAAAGACAGAAGGGAAGAACCCGTATCCTCATAAATTCTTTGTCACTATGTCTATTGATCAATACATCAAGGAATATGGAGGTTTAAGCAACGGGCAACACATTGAGGATGTCTCTGTGTCTTTGGCTGGCCGGATCATGCACAAACGCACCTCTGGTTCTAAGCTTGTCTTTTATGACCTGCACGGTGGTGGTTGCAAGGTCCAGGTTATGGCTGATGCTAGTAAATCAGACTTGGATGAGGCTGGATTTTCCAAATTCCATTCTAATGTGAAGCGCGGTGACATAGTTGGTGTCACTGGGTTCCCAGGCAAAAGTAAGAAGGGCGAACTTAGTATTTTTCCCAAGAATTTTGTGTCGCTGTCTCATTGTTTGCACATGATGCCAAGGCAAAAGTCTGCTGCTGCTGCTATTGATAATAGAAATCCATGGATACCGGGAAGTACTAGGAATCCTGAAACATATATTTTGAAGGATCAGGAAACTAGATATCGGTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGACATATTCAAGACCAGGTCTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAACATGAGGTTATTCATGAGGATTGCTCCAGAACTGTATCTTAAGGAGTTGGTTGTTGGTGGACTGGATCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGATCTAACAGAGCAAATGTTGAGTGGTATGGTTAAGGAGCTTACGAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGATAAGGAACCTATTGAAATTGACTTTACTACACCTTTTAGAAGGATTGACATGATTGAAGAGTTAGAGAAGATGGCAGGTCTAAGTATTCCCAAAGACTTGTCAAGTGAGGAAGCCAATCAATATTTGAAGGATGCATGCGTGAAGTATGAGATCAAATGTCCTCCCCCTGAGACAACTGCTCGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAAACGTGTGTAAATCCTACATTCATCAAAAACCATCCTGAGATCATGAGTCCTCTAGCAAAGTGGCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTGTTTGTTAATAAACGTGAACTTTGCAATGCATATACTGAATTGAATGACCCTGTAGTACAACGACAGAGATTTGCTGAACAACTCAAGGATCGGCAATCTGGCGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACGGCTCTAGAATATGGTTTACCACCTACTGGTGGTTGGGGTTTGGGCATTGATCGGTTGACCATGTTACTGACTGATTCACAGAATATTAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGACTGAGTCAACCAAAACTGTTTGAATCTCAGAGAAGTAAAATCATCATACACAGGAACATGAAAAATGCAAGATGATTAATAGGGGATCTCAGTTTTGATTAGTAGACTTGGCATCGACTGGTCATGCATCGATCACACTTGGTGGTTGGATTGAATGTGATGTCATATACCAGCTTATTTATTACATATTTGAGATTTGAGACAATAGTTTAACGAATAGATTTCTCATCAACAAGCTCATATTGCTATTGTTCAATGTAGAGGTGGGTGTATGGGTTAGCTTGCCTTGCACCGCTACGTACAAGTCCGCGTGTGTGTGACGGAATATGGTTTTTGTTTAGTGATTTAGGAGCCATTTAATTGTAGTTAGACTAGAGATCGAATTAGTAATAATCAAA

Coding sequences of Glyma17g03140

Limit To All Plant Sequences

>Glyma17g03140.2   sequence type=CDS   gene model=Glyma17g03140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTTCCTTCGGAGGTACCATCTACTGACACTGGCACCAGCACCGGCACCGGCGAAACCATGAGCAAGAATGCGTTGAAGCGGGAGCTGAAGAACAAACAGAGAGAAGAAGAAAGGAAGCGCAAGGATGAGGAGAAGGCCAAAAAGGCAGCTGAAGCACAACAGGCAAAGGATAACAAATCTGCACCAGCTGATGATGAGGATATGGATCCAACTCAATACCTTGAGAACAGGCTAAAGTATCTTGCAGTTCAAAAGACAGAAGGGAAGAACCCGTATCCTCATAAATTCTTTGTCACTATGTCTATTGATCAATACATCAAGGAATATGGAGGTTTAAGCAACGGGCAACACATTGAGGATGTCTCTGTGTCTTTGGCTGGCCGGATCATGCACAAACGCACCTCTGGTTCTAAGCTTGTCTTTTATGACCTGCACGGTGGTGGTTGCAAGGTCCAGGTTATGGCTGATGCTAGTAAATCAGACTTGGATGAGGCTGGATTTTCCAAATTCCATTCTAATGTGAAGCGCGGTGACATAGTTGGTGTCACTGGGTTCCCAGGCAAAAGTAAGAAGGGCGAACTTAGTATTTTTCCCAAGAATTTTGTGTCGCTGTCTCATTGTTTGCACATGATGCCAAGGCAAAAGTCTGCTGCTGCTGCTATTGATAATGTAAATTTGAAGAGAAATCCATGGATACCGGGAAGTACTAGGAATCCTGAAACATATATTTTGAAGGATCAGGAAACTAGATATCGGTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGACATATTCAAGACCAGGTCTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAACATGAGGTTATTCATGAGGATTGCTCCAGAACTGTATCTTAAGGAGTTGGTTGTTGGTGGACTGGATCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGATCTAACAGAGCAAATGTTGAGTGGTATGGTTAAGGAGCTTACGAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGATAAGGAACCTATTGAAATTGACTTTACTACACCTTTTAGAAGGATTGACATGATTGAAGAGTTAGAGAAGATGGCAGGTCTAAGTATTCCCAAAGACTTGTCAAGTGAGGAAGCCAATCAATATTTGAAGGATGCATGCGTGAAGTATGAGATCAAATGTCCTCCCCCTGAGACAACTGCTCGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAAACGTGTGTAAATCCTACATTCATCAAAAACCATCCTGAGATCATGAGTCCTCTAGCAAAGTGGCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTGTTTGTTAATAAACGTGAACTTTGCAATGCATATACTGAATTGAATGACCCTGTAGTACAACGACAGAGATTTGCTGAACAACTCAAGGATCGGCAATCTGGCGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACGGCTCTAGAATATGGTTTACCACCTACTGGTGGTTGGGGTTTGGGCATTGATCGGTTGACCATGTTACTGACTGATTCACAGAATATTAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGACTGA

>Glyma17g03140.3   sequence type=CDS   gene model=Glyma17g03140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTTCCTTCGGAGGTACCATCTACTGACACTGGCACCAGCACCGGCACCGGCGAAACCATGAGCAAGAATGCGTTGAAGCGGGAGCTGAAGAACAAACAGAGAGAAGAAGAAAGGAAGCGCAAGGATGAGGAGAAGGCCAAAAAGGCAGCTGAAGCACAACAGGCAAAGGATAACAAATCTGCACCAGCTGATGATGAGGATATGGATCCAACTCAATACCTTGAGAACAGGCTAAAGTATCTTGCAGTTCAAAAGACAGAAGGGAAGAACCCGTATCCTCATAAATTCTTTGTCACTATGTCTATTGATCAATACATCAAGGAATATGGAGGTTTAAGCAACGGGCAACACATTGAGGATGTCTCTGTGTCTTTGGCTGGCCGGATCATGCACAAACGCACCTCTGGTTCTAAGCTTGTCTTTTATGACCTGCACGGTGGTGGTTGCAAGGTCCAGGTTATGGCTGATGCTAGTAAATCAGACTTGGATGAGGCTGGATTTTCCAAATTCCATTCTAATGTGAAGCGCGGTGACATAGTTGGTGTCACTGGGTTCCCAGGCAAAAGTAAGAAGGGCGAACTTAGTATTTTTCCCAAGAATTTTGTGTCGCTGTCTCATTGTTTGCACATGATGCCAAGGCAAAAGTCTGCTGCTGCTGCTATTGATAATAGAAATCCATGGATACCGGGAAGTACTAGGAATCCTGAAACATATATTTTGAAGGATCAGGAAACTAGATATCGGTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGACATATTCAAGACCAGGTCTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAACATGAGGTTATTCATGAGGATTGCTCCAGAACTGTATCTTAAGGAGTTGGTTGTTGGTGGACTGGATCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGATCTAACAGAGCAAATGTTGAGTGGTATGGTTAAGGAGCTTACGAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGATAAGGAACCTATTGAAATTGACTTTACTACACCTTTTAGAAGGATTGACATGATTGAAGAGTTAGAGAAGATGGCAGGTCTAAGTATTCCCAAAGACTTGTCAAGTGAGGAAGCCAATCAATATTTGAAGGATGCATGCGTGAAGTATGAGATCAAATGTCCTCCCCCTGAGACAACTGCTCGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAAACGTGTGTAAATCCTACATTCATCAAAAACCATCCTGAGATCATGAGTCCTCTAGCAAAGTGGCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTGTTTGTTAATAAACGTGAACTTTGCAATGCATATACTGAATTGAATGACCCTGTAGTACAACGACAGAGATTTGCTGAACAACTCAAGGATCGGCAATCTGGCGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACGGCTCTAGAATATGGTTTACCACCTACTGGTGGTTGGGGTTTGGGCATTGATCGGTTGACCATGTTACTGACTGATTCACAGAATATTAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGACTGA

Predicted protein sequences of Glyma17g03140

Limit To All Plant Sequences

>Glyma17g03140.2   sequence type=predicted peptide   gene model=Glyma17g03140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVPSEVPSTDTGTSTGTGETMSKNALKRELKNKQREEERKRKDEEKAKKAAEAQQAKDNKSAPADDEDMDPTQYLENRLKYLAVQKTEGKNPYPHKFFVTMSIDQYIKEYGGLSNGQHIEDVSVSLAGRIMHKRTSGSKLVFYDLHGGGCKVQVMADASKSDLDEAGFSKFHSNVKRGDIVGVTGFPGKSKKGELSIFPKNFVSLSHCLHMMPRQKSAAAAIDNVNLKRNPWIPGSTRNPETYILKDQETRYRLRHLDLMLNPEVRDIFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDLTEQMLSGMVKELTKGSYKIKYHADGIDKEPIEIDFTTPFRRIDMIEELEKMAGLSIPKDLSSEEANQYLKDACVKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIKNHPEIMSPLAKWHRSKPGLTERFELFVNKRELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD*

>Glyma17g03140.3   sequence type=predicted peptide   gene model=Glyma17g03140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVPSEVPSTDTGTSTGTGETMSKNALKRELKNKQREEERKRKDEEKAKKAAEAQQAKDNKSAPADDEDMDPTQYLENRLKYLAVQKTEGKNPYPHKFFVTMSIDQYIKEYGGLSNGQHIEDVSVSLAGRIMHKRTSGSKLVFYDLHGGGCKVQVMADASKSDLDEAGFSKFHSNVKRGDIVGVTGFPGKSKKGELSIFPKNFVSLSHCLHMMPRQKSAAAAIDNRNPWIPGSTRNPETYILKDQETRYRLRHLDLMLNPEVRDIFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDLTEQMLSGMVKELTKGSYKIKYHADGIDKEPIEIDFTTPFRRIDMIEELEKMAGLSIPKDLSSEEANQYLKDACVKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIKNHPEIMSPLAKWHRSKPGLTERFELFVNKRELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD*

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