Glyma17g03050 - SoyBase

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Report for Sequence Feature Glyma17g03050

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2037662
stop:	2038909
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06868	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr3:2167872-2168981 FORWARD LENGTH=369	SoyBase	E_val: 2.00E-68	ISS
UniRef100_Q01L40	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: H0502B11.11 protein n=3 Tax=Oryza sativa RepID=Q01L40_ORYSA	SoyBase	E_val: 2.00E-26	ISS
UniRef100_UPI000233F215	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F215 related cluster n=1 Tax=unknown RepID=UPI000233F215	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03050

Paralog	Evidence	Comments
Glyma07g37600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g027500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03050

Limit To All Plant Sequences

>Glyma17g03050.2   sequence type=CDS   gene model=Glyma17g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCATGAAAGGAGCAAGAGTTGGCGTGGGCGAGGACCACGACATGGGTGACGGAATGCAATGCAGTGACCACCCTTACAGAAACAACCCTGGCGGTATCTGCGCCTTCTGCCTTCAAGACAAACTCGGCAAGCTTGTTTCCTCTTCTTTCCCTCTCCCTCTCCTTCCTCCTTCTTCCCCTTCTTCCTCCTCCACTCTCCCTTCCATCTCCTCCCTTCCTCCCTCCTCAGCCCCCGCTCCTTCCTCCTCCACCGCCGTTTCTCACTTCAATCATCCATACTACCCTCGTAGAACGCGCCTCCCTTTTCTCTTGCCCAAGAAGAAGAGCAAGAAACCCACGTCAGCACCCACCTCTGATAATATCCTTCTCAAGCGCAGCAAATCCACTGCCACTCCCCGAAGAAACCGCTCCTTGGTCGACGACGACGACAACGACGACGACTTAGTCATTGGGCCTTTTAGTCCCAGGAAGAGAAACGGCTTCTGGTCCTTTCTCTATCTCTCTTCCAAATCATCCAAGAAACTCAACTCCAAAAGCTTCAGAGACAACAACATCAACAACACTCCGAGGATCTCCTCCATTAACTTAGCACCGGCAAGTACTAGTTCTGCAAAGCTTAAAGAAAAGTGTTGCTCTGGTTCTTCTCTCAAGACTGACATTGTTGTTGAACAAGATAACAATAACAGTAACAGTCCCAACACTGCTTCTGCTTCTTCTTTCGAGCGCAAGGTTTCGAGATCTAAATCTGTTGGGTGTGGTAGCAGAAGCTTCTCTGGGGACTTCTTCGAGAGAATCTCTACTGGCTTTGGAGATTGCACTCTCAGGAGAGTGGAGTCTCAGCGTGAAGGTAAGCCGAAGGGGACTGGTGGTGGCGCCTCCGCCGCCGTGAGCCGTGCCGGCGAACAACACCACCACCATTGCATTAAAGAGAGGGTCCGGTGCGGAGGCTTGTTTAGTGGGTTCATGATGACTTCGTCTTCTTCGTCCTCGTCTTCTTCCTCGTATTGGGTTTCTTCTTCTGCTGATGATGCTGCTGCTGTGAATGGGAAATCAGCGACTGTGGCACTCTCTCATAACAGAGGTAGGAGTTGGGGTTGGGCTTTTGCGAGTCCCATGAGAGCTTTTAGCGGTAAACCTTCTTCTAAAGAGAGTAACCGAAGGGATATTATAAGAGATGCCAATGATAAGAATGCCACGCCTAACTTATCTGCTATACCTTCCTTGCTTGCTGTCAGAGGCTGA

Predicted protein sequences of Glyma17g03050

Limit To All Plant Sequences

>Glyma17g03050.2   sequence type=predicted peptide   gene model=Glyma17g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAMKGARVGVGEDHDMGDGMQCSDHPYRNNPGGICAFCLQDKLGKLVSSSFPLPLLPPSSPSSSSTLPSISSLPPSSAPAPSSSTAVSHFNHPYYPRRTRLPFLLPKKKSKKPTSAPTSDNILLKRSKSTATPRRNRSLVDDDDNDDDLVIGPFSPRKRNGFWSFLYLSSKSSKKLNSKSFRDNNINNTPRISSINLAPASTSSAKLKEKCCSGSSLKTDIVVEQDNNNSNSPNTASASSFERKVSRSKSVGCGSRSFSGDFFERISTGFGDCTLRRVESQREGKPKGTGGGASAAVSRAGEQHHHHCIKERVRCGGLFSGFMMTSSSSSSSSSSYWVSSSADDAAAVNGKSATVALSHNRGRSWGWAFASPMRAFSGKPSSKESNRRDIIRDANDKNATPNLSAIPSLLAVRG*

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