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Report for Sequence Feature Glyma17g03030

Feature Type:gene_model
Chromosome:Gm17
Start:2026510
stop:2029231
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g03030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62830AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr3:23232539-23235353 FORWARD LENGTH=445 SoyBaseE_val: 0ISS
GO:0009225GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process SoyBaseN/AISS
GO:0019305GO-bp Annotation by Michelle Graham. GO Biological Process: dTDP-rhamnose biosynthetic process SoyBaseN/AISS
GO:0042732GO-bp Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0000139GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008460GO-mf Annotation by Michelle Graham. GO Molecular Function: dTDP-glucose 4,6-dehydratase activity SoyBaseN/AISS
GO:0048040GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate decarboxylase activity SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
KOG1429 KOG dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase JGI ISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF35Panther gb def: udp-glucose 4-epimerase [bacillus halodurans] JGI ISS
PF01370PFAM NAD dependent epimerase/dehydratase family JGI ISS
UniRef100_G7JLI8UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucuronic acid decarboxylase n=1 Tax=Medicago truncatula RepID=G7JLI8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233F214UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F214 related cluster n=1 Tax=unknown RepID=UPI000233F214 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g03030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03030
ParalogEvidenceComments
Glyma07g37610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g027300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g03030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g03030
>Glyma17g03030.1   sequence type=CDS   gene model=Glyma17g03030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCGCGAGCGCGTGCCGTTCCTCCTCGTGGGCGTGGCCATCGCCACCGTCTTCTTCCAGCTCCTCCCATCTCCATCCACTGTGGCGGCTCCTCACGAGTCGTTCCTTGAGACCGACTCGGCTCTGCCGACTCGGCGGGTGCTGTTGGAAGGGTCGACGGCGATTCAGGAGAAGAGGGGAAGGGTCCCTCTCGGGATTAAAGGCAAGAAGCAGAAGAGGGTCCTGGTGACCGGTGGAGCCGGTTTCGTTGGAAGCCACCTGGTGGACCGTCTGATTGAAAGAGGCGACAGCGTGATCGTGGTTGATAATTTCTTCACGGGAAGGAAAGAGAACGTTCTTCACCACATGGGGAACCCAAACTTCGAACTCATCCGCCACGACGTCGTTGAACCCATCCTTCTGGAGGTTGACCAGATCTACCACTTGGCTTGCCCCGCTTCCCCTGTCCATTACAAGTTCAATCCCACAAATGTGGTGGGCACGCTCAACATGTTGGGTTTGGCAAAGAGGGTAGGTGCCCGTTTTCTGATTAGTAGCACCAGTGAAGTTTACGGTGATCCACTTCAGCACCCTCAGGCTGAGACCTACTGGGGAAACGTTAATCCCATCGGTGTAAGGAGCTGTTATGACGAGGGAAAGCGCACTGCGGAGACTTTGGCAATGGACTATCACAGAGGTGCTGGTATTGAGGTGAGGATTGCTCGAATCTTCAACACTTATGGACCGAGAATGTGCCTTGATGATGGCCGTGTGGTCAGTAACTTCGTTGCTCAGGCGTTGAGGAAGGAGCCATTGACTGTTTATGGCGATGGAAAACAGACAAGAAGCTTTCAATATGTATCAGACCTGGTAGAAGGCTTAATGCGGCTGATGGAAGGTGAGCATGTCGGTCCTTTCAATCTTGGTAACCCCGGTGAATTCACCATGCTTGAACTGGCTCAGGTGGTACAAGAGACTATTGACCCAAATGCGAAGATAGAGTTTAGACCTAACACAGAAGATGACCCACATAAGAGGAAGCCGGACATCTCCAAAGCGAAGGAGCTTCTTGGTTGGCAACCCTCTGTGTCCCTCCGTGAGGGACTTCCTCTAATGGTCTCTGATTTCCGGCAAAGATTGTTCGGTGACTCAAAATTCACTGGCGGCAAAGGTGCATCTGCATCAGCATAG
Predicted protein sequences of Glyma17g03030
>Glyma17g03030.1   sequence type=predicted peptide   gene model=Glyma17g03030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRERVPFLLVGVAIATVFFQLLPSPSTVAAPHESFLETDSALPTRRVLLEGSTAIQEKRGRVPLGIKGKKQKRVLVTGGAGFVGSHLVDRLIERGDSVIVVDNFFTGRKENVLHHMGNPNFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPTNVVGTLNMLGLAKRVGARFLISSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLAMDYHRGAGIEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISKAKELLGWQPSVSLREGLPLMVSDFRQRLFGDSKFTGGKGASASA*






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