Glyma17g03000 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g03000

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1989490
stop:	1995264
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g03000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15840	AT	Annotation by Michelle Graham. TAIR10: BTB/POZ domain-containing protein \| chr4:8996963-9000852 FORWARD LENGTH=836	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
PTHR23231	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR23231:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
UniRef100_G7JLI1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kelch-like protein diablo n=1 Tax=Medicago truncatula RepID=G7JLI1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MRI9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRI9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g03000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g03000

Paralog	Evidence	Comments
Glyma07g37660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g03000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g026900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g03000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g03000

Limit To All Plant Sequences

>Glyma17g03000.1   sequence type=CDS   gene model=Glyma17g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATGGAGGAACCTCAGTTCCGCGAACATCCCAAAGCCAAAATCGCCACCATTCCGCCGTCGCAGCACTCCGACGGCGCCGCCGCCGAATTGCGCGGTGCCGATTGCAACCTGGCTTCCCTCTGCGAGCATGTCCAAATCGAAGGCTTCAATTCGGGTTCCTTCTCTGATATCGTCGTCAATGCCATGGGTTCCACTTATCACCTCCACCGTCTTATCCTCTCTCGCAGTTCGTATTTCAGGAACATGCTTCATGGGCCTTGGAAAGAAGCCGGTGCTCCTGTTGTGGCTCTTCATGTTGATGATAAGAATGTTAATGATGAGGCAATTGCAATGGCTTTGGCATATCTATACGGACACCACCCTAAGCTTAATGATAATAATGCTTTTCGTGTTCTTGCTGCTGCTTCCTTTCTTGACCTTCAGGATTTATGTGGAATTTGTACGGATTTCATTATATCTGAGCTGTGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGACTATGGCATGCATGGGGAGCGTGTTAGAACTGCTTGCTGGGGCTACCTCTGTCAAAGTGGTGGCATGGAATTGAAAGAGGTGCTTCCTAAACTTTCATCTCAAACATTACATGCATTACTGACTTCTAATGATCTGTGGATACTCAATGAAGAGAAACGGTTCGAATTGGCTTTGTACACATTCCTGGCAAAAAGTGCTCATTGCAAGGTTGAACATCCTGCGCATGGAATTTCTGGCACTGAGTCTGCAACCGGTATCCACACTGATTCTGGTAGCTCCAAGGGAAAAATTGTAACTGATAGCTGTACTAGTAACAGGTTGGAAACTGACATGGGGAAAATTGGTCTTAAAACTGATCTAAAGGACCCTAGCACTCCTAGTCTTCTAGTTGAGGTTGCAGATCCAGTGGCAGACTTCAAAGATGGGGGGGTTTCTGTTTCCAATGAACAGGTTCCACAAGCTTCATATGTCAGTTCACCAAACCTGAATCCAAGATATTCTTGTGACATGGAAGGGCCGTCATTGGGTAATTCATTGCCTGATACAGATGAGGTGAGAACATCGTGTTATGTTGAGACACCTCTTGGTGCTGGAGCTACTAGTATGGGAGCCACTGGAGTGGGTATTGAAGGGACATCTGAAGAAGGACCTTTCTACCATTTAGACAACAATAGTTGGTTAGTTAGAGATCAATCAAGATATTGCTTTTCATCGAATTCTTGTAATGAGCTGACATCCAATGATTGGGGAAGATATGGAACTCCTTTATTTTCATGGAATGGCCAGGTTGTTGGCAGAAGACAGCTTAAATCTCACCCCAGAGGAAACTTCAGAGGTCATGGAGATGAATATGACGCATTTTTCAATATATTTGAAGGGGGGTCCCTTTTATATTGCAATATGTCTTTTGATGCACTTCTAAATGTCAGAAAGCAACTTGAAGAATTAGGTTTCCCTTGCAAAGCTGTAAATGACGGTCTTTGGCTGCAGATGCTTCTTAGTCAGAGGGTACAAGAAATTGCTGCTGATACATGCAAAGTTTGCTCCCTCATGAACATGGCCTGCACTTGTCAGAAGCAATTTGCATTTTCACATGGAGCTTCTACCTCCGGATCTTACGTGCAAGAACACAATCAGAACATTATGCCTGGCAATGTGGGAAATATATATGTTGCTGAATCTTCTGCAGGCGAAAGAAATGGCCTTTTTAGACCTGTACGAGTACATGTTAGAGGTGCTATTGATGGGCTTGCAGGTATTGGCCGTGGAACTACATTTGTTCCAGCATCTGCTTCACCTCCTACACGTTTTGTCTTTTCTCGTGTACCATTTGGAGTTGGCAACAGAAACTATCCTCAGTCTGCGGCCAATGATGATTCAGAGGCACGTGCTGACCCAAATGGAGACCTGGCTGGAGATGGGTTGACAGCTTTAGTTGGGCTAAGCCTGGGAGGGAGTAATGGAACTAATGTACATACAGAGCTAACACAAAGGGGGTATGAAATGGGCTTGCAAAGCAGCATGTCTGGAACTACCGCTGGAGGTGCAAGTACTGGTGGCATTCCCATGCAGATGTTAGAGACACCGGAACATACCATTGGTATAGAATGGGATAATGTCAACAGTACTTCCATATCATTGGATTTGAAAGCACCTTTAAGCCATTTTCCCCCTTTTCGCTTTGGTGTACGTTTCGAGGATGTGCATAGGCTTGGTGAGGGCCAGGTTAAGCATTCCCCAGAAGTTTTCTATGCTGGTTCTTTGTGGAAGGTCAGTGTACAAGCTTTTAATGATGAAGACCCCCAAGGGCGGCGAACCCTTGGGTTGTTTCTTCACCGTCGGAAGGCAGAGATAACTGATATACATAGAAAGGTGCATATGTATGTTGACTCGCGTGAAAAGGTGACTGCACGCTACCAGTTGACTGTTCCATCGAAGAGGGAAATGACGGTGTTTGGAAGCTTTAAACAAACAGGCACTCTTCTACCTAAAGCTCCTAAGGGATGGGGATGGCGAACTGCTCTGCTATTTGATGAGCTTGCTGATCTTCTCCAAAACGGTGCCCTAAGGGTCATTGCTGTAGTGCAGCTTGTTTAA

Predicted protein sequences of Glyma17g03000

Limit To All Plant Sequences

>Glyma17g03000.1   sequence type=predicted peptide   gene model=Glyma17g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMEEPQFREHPKAKIATIPPSQHSDGAAAELRGADCNLASLCEHVQIEGFNSGSFSDIVVNAMGSTYHLHRLILSRSSYFRNMLHGPWKEAGAPVVALHVDDKNVNDEAIAMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCGICTDFIISELWTSNFLAYQVFAENQDYGMHGERVRTACWGYLCQSGGMELKEVLPKLSSQTLHALLTSNDLWILNEEKRFELALYTFLAKSAHCKVEHPAHGISGTESATGIHTDSGSSKGKIVTDSCTSNRLETDMGKIGLKTDLKDPSTPSLLVEVADPVADFKDGGVSVSNEQVPQASYVSSPNLNPRYSCDMEGPSLGNSLPDTDEVRTSCYVETPLGAGATSMGATGVGIEGTSEEGPFYHLDNNSWLVRDQSRYCFSSNSCNELTSNDWGRYGTPLFSWNGQVVGRRQLKSHPRGNFRGHGDEYDAFFNIFEGGSLLYCNMSFDALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKVCSLMNMACTCQKQFAFSHGASTSGSYVQEHNQNIMPGNVGNIYVAESSAGERNGLFRPVRVHVRGAIDGLAGIGRGTTFVPASASPPTRFVFSRVPFGVGNRNYPQSAANDDSEARADPNGDLAGDGLTALVGLSLGGSNGTNVHTELTQRGYEMGLQSSMSGTTAGGASTGGIPMQMLETPEHTIGIEWDNVNSTSISLDLKAPLSHFPPFRFGVRFEDVHRLGEGQVKHSPEVFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDIHRKVHMYVDSREKVTARYQLTVPSKREMTVFGSFKQTGTLLPKAPKGWGWRTALLFDELADLLQNGALRVIAVVQLV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain