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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma17g02990

Feature Type:gene_model
Chromosome:Gm17
Start:1985123
stop:1988138
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15820AT Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524 Blast hits to 443 proteins in 102 species: Archae - 0; Bacteria - 13; Metazoa - 196; Fungi - 37; Plants - 43; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink). | chr4:8992970-8995022 FORWARD LENGTH=460 SoyBaseE_val: 1.00E-49ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1MRI8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1MRI8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g02990 not represented in the dataset

Glyma17g02990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g37670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g026800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g02990.2   sequence type=CDS   gene model=Glyma17g02990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTGCGCATTACACTCTTTCCTCTGTTCTCGCGCCTCAAGCTACCGGACGAACCACTCTTCGTATTCCAATTTCTTCAAAACGCCACAGGAAAAACCATTTGCGACCCAAAATTCTGAAAATCCTTACTAAACCTTACCCACTCACCCTTCCTCTTCTACCATCACCACCGCCGCCGCCACACCCTATCGTCTTGCCTCAAGAAAACAACAACCTCTGTGTCGAGCTTCCCGCCGAAGAGACGCTCGCCGGAGAACCAGATAAATTGGAAGAGTTACAAGTCTCGGAGGGCACCACGAAGGACAATGGTGTTTTCCAGAACGTTTCTGCCGTGGATATATTGAAATACGGCGGTATGTATTTTCTTGGGTTTTTTGTGTTGCAGACGATTTACACCGTTTGGATTGTGGGGATTTTCAAATTCAACCAGAAGGATAGGGATTTGGAGATAGATAGGGATGAGAAAACTGTGTCATGGCCTGTTCATGGTGCTAGCAATGTTTTTCTTTCTGAGGAACAAGTTTTAATGGATAAGAAAATCGAGGAAATTAAGTTAATGGCCAGAGAAGCGCGGCGAATTGAATCGGAGAAGAAAGGTAAAGAGGATGAGGATGAGGATTTTGAAGTGGATGATGATGATGACGACGAAGGTGCTGTTTCTAGTAATAGACTTGGTATTGAGAAAGAGATTGGTGAGCGATTGTTAAAGGTGCAGAATAGGATTAATGGTAGTGCTAAGGATATTTCAGCAGCGTTACAGATTAATTCTCGTGGGAATTCTGCAGCTGGAGTGGATAGGGGTGTCAATAAGAATGTGAAGAATAAGGGAAATGAGGCATTGGTGTTCAAGAAGAAGTTTAAATTCAAAAGCCCTTCTACTAAGGATACAAAGACTCCCAAGGGCTTTCCAGGGAACCGAGATTGGAAAGAATCTAAGGCAACGAAGAGGGGTTCAGAAAGTAAGAAAGCAGCTCAAGATCATGGAAGTGATGATGTTTCTGATCATGCACAAATGTTACATGAAGATAAACGAGCCAATCAGCCGGAGCTTGTGACGCAGAAGAGTGTTTCTAGTGTTCCTTCGGAAGAAGGAGGAAAAGTTGTTGATGACAAGTCCAAGGTGATGCAAGACAGTATAAACGGCAATTCAAGGCATGAATTGGCTAAAAAAAATTCACAAGCTAACAGAGTCAAAGTTAAGCAAGCGAATACTAAAACTGATGTGTGGTGGCTGAACCTCCATTATGTTTTTGTCATTCTCATGCAAAGAGATTCCGAGGAAGGATTAGAAGGTCTATATTATGGCCTAAAGTTCACCTCTAAGGAACAGGAACAAAGTGATGATGATTCCTATACAGTTGCTTTTGAGGATCATGCTGATGCCAACAACTTCTGTTTTCTATTAAAATCCTTTTTTGAAGATTTGGGGTCTTTTAGTGCTTATGCAGTTCCAATGCCAATACAAGAACTGAATGAAGAAATAATATCACGTGCCAAGAAAGTGGTAGTTGTGAAAAAGAGGCAGCTTCAACTCTATGCTGGGCAACCACTTGCTGATGTTGAAATGCACTTGCGCTCTATAATAGAGCAAGATCAAATTGCACCATAA

>Glyma17g02990.2   sequence type=predicted peptide   gene model=Glyma17g02990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAHYTLSSVLAPQATGRTTLRIPISSKRHRKNHLRPKILKILTKPYPLTLPLLPSPPPPPHPIVLPQENNNLCVELPAEETLAGEPDKLEELQVSEGTTKDNGVFQNVSAVDILKYGGMYFLGFFVLQTIYTVWIVGIFKFNQKDRDLEIDRDEKTVSWPVHGASNVFLSEEQVLMDKKIEEIKLMAREARRIESEKKGKEDEDEDFEVDDDDDDEGAVSSNRLGIEKEIGERLLKVQNRINGSAKDISAALQINSRGNSAAGVDRGVNKNVKNKGNEALVFKKKFKFKSPSTKDTKTPKGFPGNRDWKESKATKRGSESKKAAQDHGSDDVSDHAQMLHEDKRANQPELVTQKSVSSVPSEEGGKVVDDKSKVMQDSINGNSRHELAKKNSQANRVKVKQANTKTDVWWLNLHYVFVILMQRDSEEGLEGLYYGLKFTSKEQEQSDDDSYTVAFEDHADANNFCFLLKSFFEDLGSFSAYAVPMPIQELNEEIISRAKKVVVVKKRQLQLYAGQPLADVEMHLRSIIEQDQIAP*







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