SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02510 | AT | Annotation by Michelle Graham. TAIR10: translocon at the outer envelope membrane of chloroplasts 159 | chr4:1104766-1109360 FORWARD LENGTH=1503 | SoyBase | E_val: 4.00E-119 | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009707 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0004888 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane signaling receptor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0016817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides | SoyBase | N/A | ISS |
| PTHR10903 | Panther | AIG1 | JGI | ISS | |
| PTHR10903:SF24 | Panther | OS03G0835100 PROTEIN | JGI | ISS | |
| PF04548 | PFAM | AIG1 family | JGI | ISS | |
| UniRef100_G7JLH6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Translocase of chloroplast n=1 Tax=Medicago truncatula RepID=G7JLH6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MRI7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRI7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g02981 not represented in the dataset |
Glyma17g02981 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g026700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g02981.1 sequence type=CDS gene model=Glyma17g02981 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCAGACTCGAAGAGCTTCTTCTTCATGTCTGCACCTCCTCAAATCCGAGCTCCTCTTACTCTCGAAGCTGATGATTCCGACCTCGATGTTGCAAGTAATGATACTCTTTCTCAATCTGAAGAAGAAGAGTTTTTTCAAGATGATGAGTGTGTGCAGCTATCTCCCATGCATGCTGCACCTTTGCGGGTTACTCCTTTTGCCCATTTGTCTACCTTTAATGATGAAGTGGACGAAGACGAAGACGAAGACGAAGACGAAGACGACGACAATGAAGAAGAAGAAGGAGAAGAGGAAGGTGCGCCCAGAATTAAGATGCTGGACTCAGAAGAAGAAAATCACGAGGCGTCGACTTTTACGAACTTGTTACCTGTTAGTCAATCACTGCTTGCAAATGATTTCGCATTTTTCAGTGGCAGTGACGAGGAATTGGATGTGGATGAGCATGTTCTGGACCCGGTTCTTGGAATTAGGGTTGCTTATCATGAATACTCTAGTGCAAAAGATTCTGATGTTACGTCGGAGCATTCACAGGACAATTTCAACAACGAAGAGGGATTTGGCGTGCCAAGAGTGGTACTCAATGAACTGGAGAGTGTTGAGCTGGTTGAGACTGATACCACAATGCAAGGGAAGTTGGATGGAGGAGCTTCAATTGTTGTTGGTGACACCGGCTTATTGAAGTCCAGTCTTGAGGATTGCAGCAACAGCATATTACAGGAACATCATATGAGTGTTCATGACCTACCAGAACACAACTCCCAAGTACATTGCATCACATGTGAACCTGAATCTGCTGAAAATGTTCAGTATAGTGCAGCGACTCAAACCACTGAAGCTAATGGAAGTGGAGGTGTTGCCGATGATCAAGTAAAGGGATGTGAGAATCTGGTAAGTATAACTAGATCTGTAGTAGACTCAAATGCTGAATTGTGTGATTCTTCTGCTGGTTTTGAATCCAATCATGATGCTTATGAAAGTAACATAATTCATAGTGTTGAGTCTTGTGAAGTTCTTGACCCCACGCATCTTCAAGAATGTTATTTGGAAAAGGATTTGTCTGAAACGAGTCTAGGTGTTAGTCTAGAAGATGAATTGTTTTCTGATTACCATTCAGCGGAACATGTGGAAGCACTTAAAGTGGGATTCGCTGCAAAAGAAGAGACTACTGTTGAGTTAAACACGGCTAGCCAAGAATCAGACAGAGAAGGTTCTGCTTCAGATGGGGATGTGGAAGGGTTGACAACAGTTGCCCTTGAGCAGTTCAGGGAACAAATTTCAGCTTTCTCTATTCTTCTGGGTTCAAAAGGTTCTGGAAAGGACTCTCAAGAAAAACAGACCATCAGGATTTCACATGGATCAATGAACTTACCAACTAGGGATGATGCAAAAGGCCAATTCATTTATGCTGATAGTGATGATGAATCAGATGGCAGCTCAGGTACAGTCACCTCTGCTGATGAATCCAGTGTTATCTGTCTTGAAGATCCAGCTACTTTCAGTTCCTTACAGTTACCATATTACGATGCTCGAGCTGGTTTCCAGCACAACATAACTGAGAAGGAAAAGGGGAAAATACAGAATATACAGGCCATAAGTGTGAAATTCTTGAGGCTTGTCCTGCGAATAAGCTTATCTCTTGAAGATTCCTTGGTTTCAAAAGTTTTATACAGGTTGGTCGCAGATATTGAAAGGCGCTTGAATCAGGAATTTATCATTAAATCAGCAAAAACATCAGCAAAGAAGCTTGAAGAAAATTGTCAAGATGATTTGGACTTTTCTTTGAACATTCTGCTTCTTGGGAGAAGTGGGGTGGGAAAGAGTGCAACCATAAATTCTATTTTTGGTGATATGAAGGTCGTGACAAATGCATTTGAACCTGCCACTACTTCTGTAAAAGAGGTTTCTGGAACTATTGATGGAATCAAGATCAGAATCCTTGACACACCTGGTCTCAAGTCCTGTATAAAGGAGCAAGCTTACAACAGAAAGATATTGTCATCTGTAAAGAGGTATATGAAAAAGTTTCCACCAGATGTCATTCTCTATGTTGATCGAGTAGATGCCCAAACCAGAGATCTAAATGATTTACCAATATTAAGGTCAATCACAAGTTCTCTCGGTCCCTCAATATGGCAACATGCAATTCTTACTCTGACACATGCTGCTTCTGTTCCTTTCGATGGACCATCAGGATCCCCTTTGAGCTATGAAGTATTTGTTGCTCAAAAATCCTATCTTGTTCAACAATCAATTACTCAAGCAGTACGTAATCTATGTCAATTGAGTCCAAGTTTCATGTGTCCAGTCGCCCTTGTTGAGAATCATCCATTGTGTGGAAAGAATATGTTTGGGGACTGTGTGCTTCCCAATGGACTTAGATGGAGAAGCCAATTATTAGCTTTGTGTTTCTCTCTGAAGATCGTATCTGAAGTGTCTTCTATTTCAGGATCTCAAACTCTTTTTGATAATTGGAAGAATTGTTTCTTCCAGGACCATCCCCAGCCTCTGTGCCATCTATTTTCTTCATTGTTGAAGTCTCCTGCTCATCTAAAATTTTCTGCCAATTGGAATTGA
>Glyma17g02981.1 sequence type=predicted peptide gene model=Glyma17g02981 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSDSKSFFFMSAPPQIRAPLTLEADDSDLDVASNDTLSQSEEEEFFQDDECVQLSPMHAAPLRVTPFAHLSTFNDEVDEDEDEDEDEDDDNEEEEGEEEGAPRIKMLDSEEENHEASTFTNLLPVSQSLLANDFAFFSGSDEELDVDEHVLDPVLGIRVAYHEYSSAKDSDVTSEHSQDNFNNEEGFGVPRVVLNELESVELVETDTTMQGKLDGGASIVVGDTGLLKSSLEDCSNSILQEHHMSVHDLPEHNSQVHCITCEPESAENVQYSAATQTTEANGSGGVADDQVKGCENLVSITRSVVDSNAELCDSSAGFESNHDAYESNIIHSVESCEVLDPTHLQECYLEKDLSETSLGVSLEDELFSDYHSAEHVEALKVGFAAKEETTVELNTASQESDREGSASDGDVEGLTTVALEQFREQISAFSILLGSKGSGKDSQEKQTIRISHGSMNLPTRDDAKGQFIYADSDDESDGSSGTVTSADESSVICLEDPATFSSLQLPYYDARAGFQHNITEKEKGKIQNIQAISVKFLRLVLRISLSLEDSLVSKVLYRLVADIERRLNQEFIIKSAKTSAKKLEENCQDDLDFSLNILLLGRSGVGKSATINSIFGDMKVVTNAFEPATTSVKEVSGTIDGIKIRILDTPGLKSCIKEQAYNRKILSSVKRYMKKFPPDVILYVDRVDAQTRDLNDLPILRSITSSLGPSIWQHAILTLTHAASVPFDGPSGSPLSYEVFVAQKSYLVQQSITQAVRNLCQLSPSFMCPVALVENHPLCGKNMFGDCVLPNGLRWRSQLLALCFSLKIVSEVSSISGSQTLFDNWKNCFFQDHPQPLCHLFSSLLKSPAHLKFSANWN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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