SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G16565 | AT | Annotation by Michelle Graham. TAIR10: alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding | chr3:5640531-5642675 REVERSE LENGTH=256 | SoyBase | E_val: 1.00E-40 | ISS |
| GO:0006419 | GO-bp | Annotation by Michelle Graham. GO Biological Process: alanyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0043039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004813 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alanine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR11777 | Panther | ALANYL-TRNA SYNTHETASE | JGI | ISS | |
| PTHR11777:SF2 | Panther | ALANYL-TRNA SYNTHETASE | JGI | ISS | |
| PF01411 | PFAM | tRNA synthetases class II (A) | JGI | ISS | |
| UniRef100_G7JLH0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alanyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7JLH0_MEDTR | SoyBase | E_val: 6.00E-72 | ISS |
| UniRef100_UPI000233E3A4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E3A4 related cluster n=1 Tax=unknown RepID=UPI000233E3A4 | SoyBase | E_val: 2.00E-105 | ISS |
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Glyma17g02911 not represented in the dataset |
Glyma17g02911 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g37720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g02911.1 sequence type=CDS gene model=Glyma17g02911 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAAGAATCAGACGAAGCTGGAATACTTTGATGAGATGTGGAGGCTCCAATGCACTGCCACACTATTATCTCACTTGAAGGAGGATGATGATGGTCGGCATGTTTTGATATTGGATCGTACAATATTCTATCCGCAAGGAGGTGGTCAACCACCAGATACTGGCTTTCTACTCATTCATGGCTTTGACAACAACAAATTTCTGGTCTTTCACTATGGTTTCTTTGAGAACCTAGGTGGGAAATTTGAGCCTACACTCGAGAAAGGGAAGGAGGTTTCACTGTTTGTTGATGAGTTCAGACGAAAACTGAACTCCAGGTTTAAATTTTTGCAGACCATGAAATTCTTCAATTTTCTCTTGAATATGCAGAGTAAGCAAAAGGATTTAGAGCTGGAGGCCAATGCATTAATTTCCGTGGGAGGAAAAGTTTCCGTTGATATATTACCGTATGATGAAGCTGCTAAGCTTTGCGGTGGGTGTCTTCCTGATTATGTTCCCAAGAAGATTCACGCTTATGGTGTTCTATCCACTTTGAACTTTGTAGAAGTCCTCATAAGTCATAAATATGAAATTTTTTTCTTGAAAATGGAAGAAATTCTCTTTCCAGTCATTGTGAAAGTGATAAAATCATTTCAAGCCTTAATATCAGTATCAGTTAAGGAATACAACTGTTTTCCCTTTGCTGCCTTCTTGGTTTATCAAATTCGCTCAAAGAAGGGGCTGACAAAAGTCTTTTACAATGTTGAATCCTAG
>Glyma17g02911.1 sequence type=predicted peptide gene model=Glyma17g02911 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDKNQTKLEYFDEMWRLQCTATLLSHLKEDDDGRHVLILDRTIFYPQGGGQPPDTGFLLIHGFDNNKFLVFHYGFFENLGGKFEPTLEKGKEVSLFVDEFRRKLNSRFKFLQTMKFFNFLLNMQSKQKDLELEANALISVGGKVSVDILPYDEAAKLCGGCLPDYVPKKIHAYGVLSTLNFVEVLISHKYEIFFLKMEEILFPVIVKVIKSFQALISVSVKEYNCFPFAAFLVYQIRSKKGLTKVFYNVES*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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