Glyma17g02900 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g02900

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1928956
stop:	1932136
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16560	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr3:5636051-5637702 REVERSE LENGTH=493	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0700	KOG	Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF171	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9RT42	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase-2c, putative n=1 Tax=Ricinus communis RepID=B9RT42_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MRH9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRH9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02900

Paralog	Evidence	Comments
Glyma07g37730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g026100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02900

Limit To All Plant Sequences

>Glyma17g02900.1   sequence type=CDS   gene model=Glyma17g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAATTCTGAAGGAGAACTTAAAATAAGTTTTGGCTATAAATGCAATAGAGATAGAGGTATTCCTTGTGAAGTTGTCAGTGGCTGCAAAATCCTTCCTGGAGTATGTAGAACAAGCAGTTTCTCCTGCTTGTCAGGTGCAGCCTTAAGTGCAAATGCTACATTAGCAAACACAAACATCTGCAATGGTAAGATAGGAGAAGAAATCCTTCCAAGTTGGGACTCTCCTACTTCATTTCGAAAGGTAACCTCTTCGCCAAGTCTTTCAAAGTTGGACATACTATCATCCTCCCCCCCGAATAGTTTGTCTTACCTTAGCTGCAGTCCTTCTACTGTAAGTGATATCCTTGAATATGACTCTTGCACATTAAAATCCATGAGTGATCCTTCCAGAAGTGAAGGTTTTCTTAATGCTAAGGAAGTTCAGGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTATTCTGTGCAATATATGACGGCTTTAATGGAAGAGATGCAGCTGACTTTCTGGCTGGTACCCTGTATGAAACCATCATATCTTACTTTAATAAGTTAATTTGGGAATTGGAGCCGGGTTCCATCAAAGCTTATGATAAAGGATGCTTGGGTGGATCCCTGCAATATAAGTTGGATGATAGTCTTATTTATCACGAGAATCAATCTCTGTCGAGATTTAAGGGAATAAACAATTCTAATCATGGTTGTTTTGCAAAGTGTAATCCTTCTACTAAGTCAGAAGTATCATGTGATTCATTTTCACATGGGGTACTTGATATCCTTCAACGTGCCATTAGTCAGGCTGAGAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCTGATTTAGTTTCTATTGGATCTTGTGTTTTACTTGTGCTTCTTCACGGTAATGATTTGTATACACTTAATCTAGGTGACAGCAGAGCAGTATTGGCAACATGCGGTACAGCTGATCGGATGGATAAGAGTGAGAGACTCAAGGCTATACAGCTTACAGATAATCATACTGTTGATAATAAAGTTGAAAGAGCTAGACTTCTGGCTGATCATCCTGATGATCCCAAGATTGTTATAGCAGGAAAGGTGAAAGGTAAATTGAAGGTTACTCGCGCTTTTGGAGTTGGCTACTTGAAAAAGAAAAGTCTGAATGATGCTTTGATGGGAATCCTTCGAGTTCACGATCTTAAAAGCCCACCATACATATCCACTAACCCATCATTGAATGTCCATAGAATCTCAAATTCCGATCAATTTGTTATAGTAGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGCAGTAAAGCTTGTGGAGTCTTATATCTTGAACAATCCTTTTGGTGATCCAGCAAAGTTTCTCATAGAACAGCTTGTAGCTAGAGCAGCTGATTCTGCCGGTCTGAGCATGGAAGAGTTGATGAATATTCCAGCTGGAAGGAGAAGGAAGTACCATGACGACGTGACCGTAATTGTAATCATGCTAGGGATGAATCAGAGGACTTCAAAGGCATCAACTTGCATTTAA

Predicted protein sequences of Glyma17g02900

Limit To All Plant Sequences

>Glyma17g02900.1   sequence type=predicted peptide   gene model=Glyma17g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNSEGELKISFGYKCNRDRGIPCEVVSGCKILPGVCRTSSFSCLSGAALSANATLANTNICNGKIGEEILPSWDSPTSFRKVTSSPSLSKLDILSSSPPNSLSYLSCSPSTVSDILEYDSCTLKSMSDPSRSEGFLNAKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIISYFNKLIWELEPGSIKAYDKGCLGGSLQYKLDDSLIYHENQSLSRFKGINNSNHGCFAKCNPSTKSEVSCDSFSHGVLDILQRAISQAENDFLYMVEQEMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCGTADRMDKSERLKAIQLTDNHTVDNKVERARLLADHPDDPKIVIAGKVKGKLKVTRAFGVGYLKKKSLNDALMGILRVHDLKSPPYISTNPSLNVHRISNSDQFVIVGSDGLFDFFSNDEAVKLVESYILNNPFGDPAKFLIEQLVARAADSAGLSMEELMNIPAGRRRKYHDDVTVIVIMLGMNQRTSKASTCI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain