Report for Sequence Feature Glyma17g02890
Feature Type: gene_model
Chromosome: Gm17
Start: 1924325
stop: 1926353
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g02890
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G27690 AT
Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr5:9803796-9805036 FORWARD LENGTH=352
SoyBase E_val: 7.00E-30 ISS
GO:0030001 GO-bp
Annotation by Michelle Graham. GO Biological Process: metal ion transport
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0046872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion binding
SoyBase N/A ISS
KOG1603
KOG
Copper chaperone
JGI ISS
PTHR22814 Panther
COPPER TRANSPORT PROTEIN ATOX1-RELATED
JGI ISS
PTHR22814:SF16 Panther
CHLOROPLAST-TARGETED COPPER CHAPERONE
JGI ISS
PF00403 PFAM
Heavy-metal-associated domain
JGI ISS
UniRef100_B9RT41 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast-targeted copper chaperone, putative n=1 Tax=Ricinus communis RepID=B9RT41_RICCO
SoyBase E_val: 1.00E-38 ISS
UniRef100_I1MRH8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRH8_SOYBN
SoyBase E_val: 3.00E-176 ISS
Expression Patterns of Glyma17g02890
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g02890
Paralog Evidence Comments
Glyma07g37740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g02890 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g026000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g02890
Coding sequences of Glyma17g02890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g02890.2 sequence type=CDS gene model=Glyma17g02890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGCAAAGTCTGCTGAAGCTGTTGTTCCCTCAGAACCGTTGAAGTATCAGACATGGTTGTTGAAAGTTTCGATCCACTGTGAAGGTTGCAGGAGGAAAGTTAAGAAGGTTCTGCAGAGCATTGATGGTGTTTTTACCACAACGGTTGACCCGCAACAGCAGAAAGTAACCGTCACTGGAAGCGTTGGAGTTGAGACGCTGATAAGGAAACTGGTCAAAGCTGGAAAACACGCCGAGATTTGGCCGGAGAATCTCGCTGCCACCGGAAAGGGAAAGAGCTCCTGCAAAGACAAGATGCAGCGGCAGAACAACAACAACAACAAAGAACAAGGAGAACCAGAAAGCGTGGAAAACAACTCTACTACAGTAAATGCAGAACCCAACAGTAGAAACACGAGCAAAAAAAAGGGAATTGAAAAAAATGCTGAAAAGCGCAACAACGGCGGAAACAAGAGCACCGGAAGCTCAAAGTCCGTCGGCGTAGCCGGAGAAAGTGAGGCAGCGGAACCGGAGAACAAGGGTGGTCAACGTGAAGGAGGTTCTGGGAAGAAAAAGAAAAAGAAAGGTCAAAGTGGGGGTGAGAGAGCAGCATGTGGTGATGCACCTGCACACACTGGATCGGAGGTGCAGTGTTCTGGGCAGGTGAATCTGAGCCATACACGTCAGCAATCATACATGTATCCAGAAAGTTACTGTTATCCCCCACAGCCACAGGTGTATCTTGCAACAACCCAGAACAACAACAACAGGTTATGTCCTTCTTACTATGTTTCACCATTGCCCTACATGTGTGCAGGCTTCGACCATGACCCTCCTTATCGCTTTCAATCTCCACCCTTCGAGATCTTCAGTGACGAGAATGCCAACGCTTGTTCTATTATGTGA
Predicted protein sequences of Glyma17g02890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g02890.2 sequence type=predicted peptide gene model=Glyma17g02890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDAKSAEAVVPSEPLKYQTWLLKVSIHCEGCRRKVKKVLQSIDGVFTTTVDPQQQKVTVTGSVGVETLIRKLVKAGKHAEIWPENLAATGKGKSSCKDKMQRQNNNNNKEQGEPESVENNSTTVNAEPNSRNTSKKKGIEKNAEKRNNGGNKSTGSSKSVGVAGESEAAEPENKGGQREGGSGKKKKKKGQSGGERAACGDAPAHTGSEVQCSGQVNLSHTRQQSYMYPESYCYPPQPQVYLATTQNNNNRLCPSYYVSPLPYMCAGFDHDPPYRFQSPPFEIFSDENANACSIM*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
