SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48970 | AT | Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein | chr5:19857028-19859374 REVERSE LENGTH=339 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006839 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial transport | SoyBase | N/A | ISS |
| GO:0030974 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thiamine pyrophosphate transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005743 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0090422 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate transporter activity | SoyBase | N/A | ISS |
| KOG0752 | KOG | Mitochondrial solute carrier protein | JGI | ISS | |
| PTHR24089 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24089:SF112 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00153 | PFAM | Mitochondrial carrier protein | JGI | ISS | |
| UniRef100_B9RT35 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial deoxynucleotide carrier, putative n=1 Tax=Ricinus communis RepID=B9RT35_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MRH3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRH3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g02840 not represented in the dataset |
Glyma17g02840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g37800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g025600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g02840.4 sequence type=transcript gene model=Glyma17g02840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAAAGTGGAATGAAACAATTGTTTTACAATATACAACTGCAATAAAGATAAAATAGCTTTCAAAATAAACTAGACAAATGATTTACGAAATCTTTAACCACAGTATAAGATTGGGAAGCAAAAGCGAGTATCGTATTGTTCTGACCAGTGACTACTGACCCTACAATCTCTCCACTTTTCAATCAAATCAATTCCAATGTCGGCTCTCTTCTCCTTCATCTTCCCATCCAGGTGCGCGCGGATCCCAAACGACGCGTCGTTTCGTTTTCTCTCTCAGTTTTCGGAAACCCTAATTTGATTCAATTTTGCAGCTGAAAAGGGAGGAGAGAGTGTTTGCGTTGCGGCAATGGAGGAACCGAGCAAACTGAAGCGTGCCATGATTGATTCCTGGGCTGGGGCAATTTCTGGTGGAATATCACGGACAGTTACCTCGCCCCTCGATGTTATTAAGATTCGATTCCAGGTTCAGCTAGAGCCCACATCTTCATGGGCTTTATTACGGAAGGATTTGGCTGCAGCATCAAAATACACTGGTATGTTTCAAGCAACCAAGGACATTCTTAGAGAAGAAGGCGTACAGGGGTTTTGGCGGGGAAATGTGCCGGCATTGCTCATGGTTATGCCATATACAGCTATACAATTTACAGTTTTACACAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAATCAGAGAATCACATTAATTTGAGCCCTTGTCTATCCTACCTCAGTGGGGCATTAGCTGGGTGTGCAGCTACATTAGGTTCTTATCCCTTTGATCTTCTCCGAACTATATTAGCTTCTCAAGGTGAACCAAAGGTATATCCAAACATGAGGTCTGCATTCATGGATATCATCCATACTCGTGGATTCCAAGGCTTGTATTCTGGATTATCGCCAACTTTAGTGGAGATTATACCTTATGCAGGCCTACAATTTGGCACATATGATACATTTAAGCGTTGGGGCATGGCTTGGAATCATAGATACTCCAACACTTCTGCAGAAGATAACCTCTCTAGCTTTCAGCTTTTCCTTTGTGGATTGGCAGCGGGAACATGTGCCAAGCTTGTCTGTCATCCACTAGATGTTGTCAAAAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCAAGATATGGAGCTCGAGTTGAGCATCGTGCATACAGGAATATGCCTGATGCCATGCAACGGATATTTCGATTAGAGGGTTGGGCTGGTCTGTACAAGGGGATAATTCCATCAACTGTCAAAGCTGCACCTGCTGGTGCTGTGACATTTGTTGCTTATGAATTGACATCAGATTGGTTAGAGTCCACTTTCAATTGATTTTTTCCCATTTTTTCTTCATGATTAGTGATCATATTCTTTTTTGAAATACAAGTTGATTCCCTCGTAGTATAGGAAGAAAGTGTGAGGGATATGCTAATTTTTTGTAATGATAGTGGTAGTTGATAAGATTGAACTTCCTTTAAGATGGAAGATTTGTCCTTGATGCTTGCGTCTGATTTGGAATTCTAAATGTAAATTTCCAAAATGGTGCAAAAGCCTATCTAGGAACAAGTTGTGTTTGGTTTCAACCTATATTTGGTCTTTGGTAGTAAAATTCGGACATAATTAATGGCCATCTTTTTGAGCTTTTGAGGTTCTCAGTCTGTGCCGTACAGATTCTTCAGCATCCTATTGTTGG
>Glyma17g02840.3 sequence type=CDS gene model=Glyma17g02840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAACCGAGCAAACTGAAGCGTGCCATGATTGATTCCTGGGCTGGGGCAATTTCTGGTGGAATATCACGGACAGTTACCTCGCCCCTCGATGTTATTAAGATTCGATTCCAGGTTCAGCTAGAGCCCACATCTTCATGGGCTTTATTACGGAAGGATTTGGCTGCAGCATCAAAATACACTGGTATGTTTCAAGCAACCAAGGACATTCTTAGAGAAGAAGGCGTACAGGGGTTTTGGCGGGGAAATGTGCCGGCATTGCTCATGGTTATGCCATATACAGCTATACAATTTACAGTTTTACACAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAATCAGAGAATCACATTAATTTGAGCCCTTGTCTATCCTACCTCAGTGGGGCATTAGCTGGGTGTGCAGCTACATTAGGTTCTTATCCCTTTGATCTTCTCCGAACTATATTAGCTTCTCAAGGTGAACCAAAGGTATATCCAAACATGAGGTCTGCATTCATGGATATCATCCATACTCGTGGATTCCAAGGCTTGTATTCTGGATTATCGCCAACTTTAGTGGAGATTATACCTTATGCAGGCCTACAATTTGGCACATATGATACATTTAAGCGTTGGGGCATGGCTTGGAATCATAGATACTCCAACACTTCTGCAGAAGATAACCTCTCTAGCTTTCAGCTTTTCCTTTGTGGATTGGCAGCGGGAACATGTGCCAAGCTTGTCTGTCATCCACTAGATGTTGTCAAAAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCAAGATATGGAGCTCGAGTTGAGCATCGTGCATACAGGAATATGCCTGATGCCATGCAACGGATATTTCGATTAGAGGGTTGGGCTGGTCTGTACAAGGGGATAATTCCATCAACTGTCAAAGCTGCACCTGCTGGTGCTGTGACATTTGTTGCTTATGAATTGACATCAGATTGGTTAGAGTCCACTTTCAATTGA >Glyma17g02840.4 sequence type=CDS gene model=Glyma17g02840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAACCGAGCAAACTGAAGCGTGCCATGATTGATTCCTGGGCTGGGGCAATTTCTGGTGGAATATCACGGACAGTTACCTCGCCCCTCGATGTTATTAAGATTCGATTCCAGGTTCAGCTAGAGCCCACATCTTCATGGGCTTTATTACGGAAGGATTTGGCTGCAGCATCAAAATACACTGGTATGTTTCAAGCAACCAAGGACATTCTTAGAGAAGAAGGCGTACAGGGGTTTTGGCGGGGAAATGTGCCGGCATTGCTCATGGTTATGCCATATACAGCTATACAATTTACAGTTTTACACAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAATCAGAGAATCACATTAATTTGAGCCCTTGTCTATCCTACCTCAGTGGGGCATTAGCTGGGTGTGCAGCTACATTAGGTTCTTATCCCTTTGATCTTCTCCGAACTATATTAGCTTCTCAAGGTGAACCAAAGGTATATCCAAACATGAGGTCTGCATTCATGGATATCATCCATACTCGTGGATTCCAAGGCTTGTATTCTGGATTATCGCCAACTTTAGTGGAGATTATACCTTATGCAGGCCTACAATTTGGCACATATGATACATTTAAGCGTTGGGGCATGGCTTGGAATCATAGATACTCCAACACTTCTGCAGAAGATAACCTCTCTAGCTTTCAGCTTTTCCTTTGTGGATTGGCAGCGGGAACATGTGCCAAGCTTGTCTGTCATCCACTAGATGTTGTCAAAAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCAAGATATGGAGCTCGAGTTGAGCATCGTGCATACAGGAATATGCCTGATGCCATGCAACGGATATTTCGATTAGAGGGTTGGGCTGGTCTGTACAAGGGGATAATTCCATCAACTGTCAAAGCTGCACCTGCTGGTGCTGTGACATTTGTTGCTTATGAATTGACATCAGATTGGTTAGAGTCCACTTTCAATTGA
>Glyma17g02840.3 sequence type=predicted peptide gene model=Glyma17g02840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEPSKLKRAMIDSWAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLAAASKYTGMFQATKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKSENHINLSPCLSYLSGALAGCAATLGSYPFDLLRTILASQGEPKVYPNMRSAFMDIIHTRGFQGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWGMAWNHRYSNTSAEDNLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMPDAMQRIFRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESTFN* >Glyma17g02840.4 sequence type=predicted peptide gene model=Glyma17g02840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEPSKLKRAMIDSWAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLAAASKYTGMFQATKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKSENHINLSPCLSYLSGALAGCAATLGSYPFDLLRTILASQGEPKVYPNMRSAFMDIIHTRGFQGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWGMAWNHRYSNTSAEDNLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMPDAMQRIFRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESTFN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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