Glyma17g02820 - SoyBase

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Report for Sequence Feature Glyma17g02820

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1868212
stop:	1870846
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49660	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr3:18413690-18415223 FORWARD LENGTH=317	SoyBase	E_val: 2.00E-175	ISS
GO:0007186	GO-bp	Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0048188	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Set1C/COMPASS complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0042393	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone binding	SoyBase	N/A	ISS
KOG0266	KOG	WD40 repeat-containing protein	JGI		ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF117	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7JKD3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JKD3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MRH1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MRH1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02820

Paralog	Evidence	Comments
Glyma07g37820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g025400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02820

Limit To All Plant Sequences

>Glyma17g02820.1   sequence type=CDS   gene model=Glyma17g02820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACGGAAGCAACAGTAAAAGCATTTTCGGATTCGGATTCAGATTCCATGAAGCCCAACTACACTCTTTCCCAAACCCTAAGCGGCCACAAGCGCGCCATCTCGGCCGTAAAATTCTCCTCCAATGGGCGCCTCCTCGCCTCCTCCGCCGCCGACAAGACCCTCCGAACCTATGGCTTCACGAACTCCGACTCGGACTCCGAGAGCCTGACGCTGTCCCCGATGCAGCAGTACGAGGGCCACGAGCAGGGCGTTTCCGACCTCGCCTTCTCGTCGGACTCCCGGTTCCTTGTGTCAGCCTCCGACGACAAGACTCTCCGGCTCTGGGACGTGCCGACTGGGTCCCTCATAAAGACCCTCCACGGGCACACCAACTACGTGTTCTGCGTGAACTTCAACCCGCAGTCCAACATCATCGTCTCCGGTTCCTTCGACGAGACCGTTAGGGTTTGGGACGTCAAGTCCGGGAAGTGCCTCAAGGTTCTCCCCGCGCACTCCGACCCTGTCACCGCCGTTGACTTCAACCGCGACGGCTCCCTCATCGTCTCCAGCAGCTACGACGGCCTCTGCCGAATCTGGGACGCCTCCACCGGCCACTGTATGAAGACTCTCATCGACGACGACAACCCTCCTGTTTCCTTTGTCAAGTTTTCCCCCAACGCCAAGTTCATTCTCGTTGGCACCTTGGACAACACTCTGAGGCTTTGGAACTATTCAACTGGGAAGTTTCTAAAGACTTACACCGGTCATGTTAATTCAAAATACTGCATTTCATCCACTTTTTCTACAACAAATGGGAAATATATTGTTGGCGGTTCAGAAGAAAATTATATATACTTGTGGGATTTGCAGTCAAGGAAAATAGTGCAGAAATTAGAAGGGCATTCTGATGCTGTTGTTTCTGTGTCATGTCACCCTACAGAGAACATGATTGCTTCTGGTGCACTTGGCAATGACAACACTGTGAAGATCTGGACTCAGCAGAAAGACTGA

Predicted protein sequences of Glyma17g02820

Limit To All Plant Sequences

>Glyma17g02820.1   sequence type=predicted peptide   gene model=Glyma17g02820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTEATVKAFSDSDSDSMKPNYTLSQTLSGHKRAISAVKFSSNGRLLASSAADKTLRTYGFTNSDSDSESLTLSPMQQYEGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVPTGSLIKTLHGHTNYVFCVNFNPQSNIIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDASTGHCMKTLIDDDNPPVSFVKFSPNAKFILVGTLDNTLRLWNYSTGKFLKTYTGHVNSKYCISSTFSTTNGKYIVGGSEENYIYLWDLQSRKIVQKLEGHSDAVVSVSCHPTENMIASGALGNDNTVKIWTQQKD*

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