Glyma17g02720 - SoyBase

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Report for Sequence Feature Glyma17g02720

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1785609
stop:	1791086
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18550	AT	Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein \| chr5:6160515-6162729 FORWARD LENGTH=465	SoyBase	E_val: 2.00E-155	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1677	KOG	CCCH-type Zn-finger protein	JGI		ISS
PTHR12506	Panther	PROTEIN PHOSPHATASE RELATED	JGI		ISS
PTHR12506:SF11	Panther	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00642	PFAM	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	JGI		ISS
UniRef100_G7JKA0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JKA0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DF5C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DF5C related cluster n=1 Tax=unknown RepID=UPI000233DF5C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02720

Paralog	Evidence	Comments
Glyma07g37980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g024400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g02720

Limit To All Plant Sequences

>Glyma17g02720.4   sequence type=transcript   gene model=Glyma17g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATCTCTCTCTCCCCCCAATGAAAAGATCGTCTCTCAGAGCAAGGAAAGAAAAAGATAAAAAATAAATAAATAAATAAAATGCTTTGAAACGGAGAGAGAAACTAGAGAGAGAAAGAGACCAAGCTAATTAGTGTAGAAGAAACAGAGACGCTGTGTGTGTGAGTGAGTGAGTGAGTGAGTGTGTGTGAGAGAGAAAGAGAAAGAGAAAGAGAGAGAAAGCAGAGAAAACCCGAAGCAGTTTTCTCACTCTTTTTAATCGGAACCTCTCATTCCGCGTTCAGATTGCGTCCCCCATTTGGTCCGTACAATGGAGCGGTACGGGCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACTTTGGCCGCCGGCGCCGACGCCGGCCTCGAAGAGTCGTCGTGGCAACTCGGATTAGCCGGTGCTGAATCGTACCCTATGCGTCCCGACGAGGCTGATTGTATCTACTATTTGAGAACGGGATTTTGCGGTTACGGCACACGCTGTCGTTTCAACCATCCTCGAGACCGTGCCGCGGTTATTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGGTTTTTCATAGATTCTGTGCTGCACTTGTATTAAATGGTTGCATTTGATGGATGATACTGTATTTACTTTCTGTTTTACGAAGTGATTTGTTTGGTTGAAAGTTCAATTTGACTTCTGTTTTTGTTTTGGTTGTCTTCAATGTTGGTGACTTTCCTTATGTGTTGGTTCTATCTGCTCATGGTTAAACTGCAGTACTTTATGAGGACCGGATTGTGCAAATTTGGTGTGTCCTGCAAGTACCACCATCCTAGGCAGGCGGCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGGTACCCATTGCGAGTGGCTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCACCATCCACAGCCTGCAGGCGTCCAAGCTCTAGCACCATCACCAGTTCCTCCAGTTTCACCTCTGCCTGTACCTGTACCTTCACCAATGTATCCAACTGTACAGATCCCATCTGGTCCTTCACAACAACAATATGGTGTACTTGTTGCAAGACCACCTATGCTACCTGGCTCAGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAGGCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGCTGGTTCAACACAGTTTTATGGGATAAGCCAGCTTCCTTCATCACCAGCTACTTTTACTGGACCTTATCAACCTTCTGGTTCCTCAATTGGTCCTTCAGGTGCTAGCCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATCATTACATGAAAACAGGGGAGTGTAAATTTGGTCTGTCGTGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAACTGTAACCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTCAGTTATAGTCCATCTGCCTCTTCCTTAGCTGATATGCCAGTGGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCGTCATCTTCATCATCAGAGTTGCGGCCTGAACTTGGTGCAGGATCCAACAAGGAGTCTGTTGCATCCAGAATGTCTTCAATGAGCACATCAACTGGATCAGTTGGCATGACTTTGTCAAGCGTTGGACCCATTTCTCACTCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTCCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAAGCAATGTGAATGCATTCCTCATTATTACTCCTTTTTATCTCAATTTTTCAACTGGCCATCATTACTCAAGGAGGTTCTCAAATAGGTTTTATTTTTCAATTATCCCAGCTCCACATTCAGGCCTAGCACACATTGCACCAATTGTCTCTGTATTCATATAATCTTTTTGTGGCCATCCCTTTGATCTTGAATAAACCATGGCCAACCTTGAGAATTTTAGCAACCCATACACGCACCTTGCTTTTGAATAACTTCAAAAGAATCTGCAACTCCATTATGCACATGTCCATTCACATCTCCAATTTTCGTAGTTTGTTGTGCTTATTATGCTTCTATCTTTTTTTATATGAGAAAATTTCTGCTCGGAGTTTCATTGACCATGTGTAATCTCTCTTCACGTTAACCCTTTTTTTGCAATTGGGAATAATATCTTCTTCTGCCTGGAAGGTCCTGTTTGCACTGTTCCCAACTTATCTAAGGTTTGAAGTGAAGAGAAGTAATCAGGAGACTACAATGAGGCTTCACATTGCTATCTTTTATGATTTTAGATACACGGTGATGTTGTGACAAGTGAAATGCTTGACTTGGTACTTAAATTTGTTACACAATACATATTTGAAGAAACACATTTAAATTAACACATTTGAATGTCTAATAATCTATTTTGCTCTGCCATTTTTTACCTGTCAAGCTTTCTCGTGATATCAGGTAGTTTTTCTGGAGTTTCTTTTTTTCATCACCCCTCCCCCCATTATATTTGAATATGTTTGTTGTAAGATGATTGTATTTATAAATAGAATACACTTTCCTC

Coding sequences of Glyma17g02720

Limit To All Plant Sequences

>Glyma17g02720.3   sequence type=CDS   gene model=Glyma17g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCGGTACGGGCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACTTTGGCCGCCGGCGCCGACGCCGGCCTCGAAGAGTCGTCGTGGCAACTCGGATTAGCCGGTGCTGAATCGTACCCTATGCGTCCCGACGAGGCTGATTGTATCTACTATTTGAGAACGGGATTTTGCGGTTACGGCACACGCTGTCGTTTCAACCATCCTCGAGACCGTGCCGCGGTTATTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGTACTTTATGAGGACCGGATTGTGCAAATTTGGTGTGTCCTGCAAGTACCACCATCCTAGGCAGGCGGCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGGTACCCATTGCGAGTGGCTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCACCATCCACAGCCTGCAGGCGTCCAAGCTCTAGCACCATCACCAGTTCCTCCAGTTTCACCTCTGCCTGTACCTGTACCTTCACCAATGTATCCAACTGTACAGATCCCATCTGGTCCTTCACAACAACAATATGGTGTACTTGTTGCAAGACCACCTATGCTACCTGGCTCAGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAGGCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGCTGGTTCAACACAGTTTTATGGGATAAGCCAGCTTCCTTCATCACCAGCTACTTTTACTGGACCTTATCAACCTTCTGGTTCCTCAATTGGTCCTTCAGGTGCTAGCCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATCATTACATGAAAACAGGGGAGTGTAAATTTGGTCTGTCGTGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAACTGTAACCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTCAGTTATAGTCCATCTGCCTCTTCCTTAGCTGATATGCCAGTGGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCGTCATCTTCATCATCAGAGTTGCGGCCTGAACTTGGTGCAGGATCCAACAAGGAGTCTGTTGCATCCAGAATGTCTTCAATGAGCACATCAACTGGATCAGTTGGCATGACTTTGTCAAGCGTTGGACCCATTTCTCACTCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTCCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA

>Glyma17g02720.4   sequence type=CDS   gene model=Glyma17g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGTGACTTTCCTTATGTGTTGGTTCTATCTGCTCATGGTTAAACTGCAGTACTTTATGAGGACCGGATTGTGCAAATTTGGTGTGTCCTGCAAGTACCACCATCCTAGGCAGGCGGCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGGTACCCATTGCGAGTGGCTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCACCATCCACAGCCTGCAGGCGTCCAAGCTCTAGCACCATCACCAGTTCCTCCAGTTTCACCTCTGCCTGTACCTGTACCTTCACCAATGTATCCAACTGTACAGATCCCATCTGGTCCTTCACAACAACAATATGGTGTACTTGTTGCAAGACCACCTATGCTACCTGGCTCAGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAGGCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGCTGGTTCAACACAGTTTTATGGGATAAGCCAGCTTCCTTCATCACCAGCTACTTTTACTGGACCTTATCAACCTTCTGGTTCCTCAATTGGTCCTTCAGGTGCTAGCCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATCATTACATGAAAACAGGGGAGTGTAAATTTGGTCTGTCGTGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAACTGTAACCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTCAGTTATAGTCCATCTGCCTCTTCCTTAGCTGATATGCCAGTGGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCGTCATCTTCATCATCAGAGTTGCGGCCTGAACTTGGTGCAGGATCCAACAAGGAGTCTGTTGCATCCAGAATGTCTTCAATGAGCACATCAACTGGATCAGTTGGCATGACTTTGTCAAGCGTTGGACCCATTTCTCACTCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTCCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA

Predicted protein sequences of Glyma17g02720

Limit To All Plant Sequences

>Glyma17g02720.3   sequence type=predicted peptide   gene model=Glyma17g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERYGRASEGSQSDPSPEWTLAAGADAGLEESSWQLGLAGAESYPMRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYFMRTGLCKFGVSCKYHHPRQAAGTATPVPLNYYGYPLRVAEKECSYYVKTGQCKFGATCKFHHPQPAGVQALAPSPVPPVSPLPVPVPSPMYPTVQIPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWSPYQAPATNPVLPSSNTSNAGSTQFYGISQLPSSPATFTGPYQPSGSSIGPSGASQKEHPFPERPDQPECHHYMKTGECKFGLSCRYHHPPDKSAPKATVTLSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGSNKESVASRMSSMSTSTGSVGMTLSSVGPISHSSTQPSAQSSSSPATTSATTSSTVSHTSS*

>Glyma17g02720.4   sequence type=predicted peptide   gene model=Glyma17g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVTFLMCWFYLLMVKLQYFMRTGLCKFGVSCKYHHPRQAAGTATPVPLNYYGYPLRVAEKECSYYVKTGQCKFGATCKFHHPQPAGVQALAPSPVPPVSPLPVPVPSPMYPTVQIPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWSPYQAPATNPVLPSSNTSNAGSTQFYGISQLPSSPATFTGPYQPSGSSIGPSGASQKEHPFPERPDQPECHHYMKTGECKFGLSCRYHHPPDKSAPKATVTLSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGSNKESVASRMSSMSTSTGSVGMTLSSVGPISHSSTQPSAQSSSSPATTSATTSSTVSHTSS*

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