Report for Sequence Feature Glyma17g02680
Feature Type: gene_model
Chromosome: Gm17
Start: 1756306
stop: 1762751
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g02680
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G18590 AT
Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr5:6178516-6182186 REVERSE LENGTH=708
SoyBase E_val: 0 ISS
GO:0006869 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid transport
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
KOG0379
KOG
Kelch repeat-containing proteins
JGI ISS
PTHR23244 Panther
KELCH REPEAT DOMAIN
JGI ISS
PTHR23244:SF29 Panther
RANGAP1-INTERACTING PROTEIN-RELATED
JGI ISS
PF01344 PFAM
Kelch motif
JGI ISS
PF07646 PFAM
Kelch motif
JGI ISS
UniRef100_G7JJ54 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acyl-CoA-binding domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JJ54_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233DF53 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233DF53 related cluster n=1 Tax=unknown RepID=UPI000233DF53
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g02680
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g02680
Paralog Evidence Comments
Glyma07g38020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g02680 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g024000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g02680
Coding sequences of Glyma17g02680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g02680.1 sequence type=CDS gene model=Glyma17g02680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTTGGCTTTTCTCGTCGCCGTATGAAACTTGGAAGATTGAAGGTGCAGCTTTCTGAGGCCAATCCCGGAACCAGAACTCCCGTCAGACCCCCAAAACGGAACGGAACGGAAATTGGAGATGCAGCTGGAGGGTCTAGTGGTCATTCTGATGAAGTTGATTGCCAGCCTTCAACTGAGATAACTAGTTGTGGCAGCTCAGAGAACTGGATGGTCTTGTCTATTGCCGGGGATAAACCCATTCCTAGATCCAATCATGCAGCAGCAGTCATTGGGAATAAGATGATAGTCGTGGGCGGCGAATCCGGGACTGGATTGTTGGATGACGTGCAGGTGCTGAATTTTGATAGATTTTCGTGGACCACCGCATCGTCAAAGCTTTACTTGTCTCCCAGCAGTCTGCCACTGAAAATTCCAGCGTGCAAGGGCCATAGTTTGGTATCCTGGGGGAAAAAAGCACTGCTCATTGGAGGGAAAACAGACCCAGGAAGTGACAGAATTTCAGTATGGGCATTTGATACAGAGACAGAGTGCTGGTCACTCATGGAGGCCAAGGGGGACATACCGGTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTGTTTGGTGGTGAGGATGCAAAAAGGAGGAAATTGAATGATCTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACGGGAACAGCACCTTCTCCAAGATTCAACCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCTGGTTGTTGTGGTGTCCTTTGTGGTACTAAATGGTATATCACAGGTGGTGGAAGCCGGAAAAAAAGACACGGAGAGACTGTGATATTTGATATTGTAAAAAATGAATGGTCTGTGGCAATCACTTCGCCTCCATCTTCTATCACTACAAACAAGGGTTTCAGCATGGTACTCGTGCAGCACAAGGAAAAGGATTTTCTTGTTGCATTTGGGGGATCCAAAAAAGAGCCATCAAATCAGGTAGAGGTGTTGATAATGGAAAAGAATGAATCAGCACTAGGGAGACAATCAGCTCCCAGTAAATGTTCAGCATCTGTACTACTTGAAAAACATTCATCATCCACTAGATTGGCCCCCCAACTTAATGATTGTTCTCAACGTTTAGTTGACTCAGTTGCTAGACAAAATCTAGCTTCTGCAATTGAACATGGTTCCGGCAGGAGATCTCTATCAGAATCCCTGGTTGTTGATCCCAATTTTCCCCCAACCAACACCTCCCTTCGTAAGCAATTTGATCACGATGAAGAATACAATACTGATCTCAAGATGGACAAGAACTCAGATGAAAATTCTTTCCCTCGGGCAGTAGATCACAGAACAAACGAAAATGACCATGGTAAACAGATGAATAGTAGTGGAGCCAAGAACATTACGGAGGAACAACAGGCACTGTTATCTGGAATTCCAATCCAACAAAACCTAGTATTTGAAAATGACATGCTAGAAAGTGATAACGTGTCATTTACTGAAAACATTAAATCAGGATCACTGACTACTTCAAATGTCTATCATTGCTATGAAAGTAAATTGGCTTCCCTGATAAGGAAAAATGGAATTCTGGAGGGACAATTAGCAGCTTCCTTAGCAAGCAAAGAAGCCGCAGAGAAAAGTTTGGCATCTGTTCTCAAAAGTAGACAGGAAATGGAGAGGAAATTGGCGGAATCACATAAGGAGATGGAATTGATGAGAGAGAAGCTGACCAGTCTAGAGTTGGCCCAGGAAGAGGCCAACAACCTATCAAACATTGTGCACTCTGACAATGTACGGCTTGAGCATGATGTGGCCTTCCTCAAGGCTGTTTTAGATGATACACAGAAGGAGTTGCACTCAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCATCTACTACACCGAGAAAACCGTTCCATGTGCAGTGA
Predicted protein sequences of Glyma17g02680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g02680.1 sequence type=predicted peptide gene model=Glyma17g02680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFGFSRRRMKLGRLKVQLSEANPGTRTPVRPPKRNGTEIGDAAGGSSGHSDEVDCQPSTEITSCGSSENWMVLSIAGDKPIPRSNHAAAVIGNKMIVVGGESGTGLLDDVQVLNFDRFSWTTASSKLYLSPSSLPLKIPACKGHSLVSWGKKALLIGGKTDPGSDRISVWAFDTETECWSLMEAKGDIPVARSGHSVVRASSVLILFGGEDAKRRKLNDLHMFDLKSLTWLPLHYTGTAPSPRFNHVAALYDDKILYIFGGSSKSRTLNDLYSLDFETMAWSRVKMRGFHPSPRAGCCGVLCGTKWYITGGGSRKKRHGETVIFDIVKNEWSVAITSPPSSITTNKGFSMVLVQHKEKDFLVAFGGSKKEPSNQVEVLIMEKNESALGRQSAPSKCSASVLLEKHSSSTRLAPQLNDCSQRLVDSVARQNLASAIEHGSGRRSLSESLVVDPNFPPTNTSLRKQFDHDEEYNTDLKMDKNSDENSFPRAVDHRTNENDHGKQMNSSGAKNITEEQQALLSGIPIQQNLVFENDMLESDNVSFTENIKSGSLTTSNVYHCYESKLASLIRKNGILEGQLAASLASKEAAEKSLASVLKSRQEMERKLAESHKEMELMREKLTSLELAQEEANNLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVIAGERARAFQLQYEVFHLKQRLQSMENRASTTPRKPFHVQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
