SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g02640

Feature Type:gene_model
Chromosome:Gm17
Start:1720628
stop:1730132
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g02640
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18620AT Annotation by Michelle Graham. TAIR10: chromatin remodeling factor17 | chr5:6196190-6202058 REVERSE LENGTH=1072 SoyBaseE_val: 0ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006259GO-bp Annotation by Michelle Graham. GO Biological Process: DNA metabolic process SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008094GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity SoyBaseN/AISS
KOG0385 KOG Chromatin remodeling complex WSTF-ISWI, small subunit JGI ISS
PTHR10799Panther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED JGI ISS
PTHR10799:SF73Panther DNA REPAIR HELICASE-RELATED JGI ISS
PF00176PFAM SNF2 family N-terminal domain JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
PF09110PFAM HAND JGI ISS
PF09111PFAM SLIDE JGI ISS
UniRef100_G7ISH3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chromatin remodeling complex subunit n=1 Tax=Medicago truncatula RepID=G7ISH3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MRF4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRF4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g02640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02640
ParalogEvidenceComments
Glyma07g38050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02640 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g023600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g02640
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g02640
>Glyma17g02640.1   sequence type=CDS   gene model=Glyma17g02640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGCCCTCCAAGACGCAGGTTTCGAACGAATTTTCCTCCGAAGAGGAAAAGGAGGAGGCCTCCGCCGCCGCCGCCAACCACGAGATCGAAGATGACGACGAGGAGCTCGAAGCGGTGGCTCGCTACGTTAGCTCCGATGACGACGATAATTCGCCGGATGAAGCCGCTGAAGACGACGACGAGGATAAACAGGATGAGAGTAATGTTGATCCGGAAGTTAGCAAGCGTGAGAAGGCCAGATTGAGAGAAATGCAACAACTGAAGAAACAGAAAGTTCAGGAGATATTGGATGCACAAAATGCGACCATTGATGCTGATATGAATAATAGAGGAAAGGGCAGATTGAACTATCTCCTACAGCAAACTGAGCTGTTTGCTCATTTTGCCAAGGGTGACCAATCTTCTCAAAAGAAGGCAAAGGGAAGAGGTCGCCATGCATCAAAAGTAACTGAAGAAGAGGAAGATGAAGAATACCTTAAAGGGGAAGAAGATGGCTTAGCAAATACACGGTTGGTGACTCAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGCATAAATGGTATTCTGGCAGATGAAATGGGGCTGGGCAAAACATTACAAACAATATCTTTGTTAGGCTACTTACATGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGTGCTGTAAAGTTCCTTGGCAATCCTGACGAAAGGAAGCACATAAGAGAGGAGTTACTCGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATAATTATTGACGAGGCCCATCGAATCAAGAATGAGAACTCACTCTTGTCCAAAACAATGAGGCTATACAATACAAACTATCGACTCCTCATAACTGGCACACCATTACAGAACAATCTTCACGAACTCTGGGCTCTTCTCAACTTTCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTGGAGGTTGTGAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTACGTAAATGCTGCAATCACCCATATCTCTTCCAGGGTGCTGAACCTGGCCCTCCCTTTACAACAGGAGACCATCTCATTACAAATGCTGGTAAAATGGTCCTACTGGATAAGTTACTTCCTAAACTAAAAGAACGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTCATGTTTTGTGGATACCAATATTGTCGCATTGATGGCAATACTGGTGGAGATGATCGAGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCTTGCTATCTACTCGCGCTGGAGGCCTTGGCATTAATCTTGCTACAGCTGATGTTGTTATTCTTTATGACAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCTCTTGATGCTCTGGTGATTCAGCAAGGGCGATTAGCTGAACAGAAGACTGTTAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGACGATGAGAATGAAGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAATTGGGTCGAGCCACCAAGAAGAGAACGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCTTACTAAACCAAAAGAGCCTCGTATTCCTAGGATGCCTCAATTGCATGACTTCCAGTTTTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGATACCTCATGCAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAGAGATGGGAGTTCCATTGACTGCCGAAGAGTTAGAAGAAAAGGAGCAGTTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGAAAAACACAAGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGGCAAGAATATCCCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAGGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGAAAGTTATACAATGAAGAATGTGACCGATTCATGATATGTATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGAATGTCGCCCTTGTTTCGATTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAAATTACAAGGAGGTGTGACACCCTCGTTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGGGGAAGAAGAAAAAATAA
Predicted protein sequences of Glyma17g02640
>Glyma17g02640.1   sequence type=predicted peptide   gene model=Glyma17g02640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRPSKTQVSNEFSSEEEKEEASAAAANHEIEDDDEELEAVARYVSSDDDDNSPDEAAEDDDEDKQDESNVDPEVSKREKARLREMQQLKKQKVQEILDAQNATIDADMNNRGKGRLNYLLQQTELFAHFAKGDQSSQKKAKGRGRHASKVTEEEEDEEYLKGEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFCGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDENEENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGLTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEMGVPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKGIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQEITRRCDTLVRLVEKENQEYDERERQARKEKKIAAKSMTPSKRSMPRQSESPSLKKRKQLTMDDYLSSGKKKK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo