Glyma17g02630 - SoyBase

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Report for Sequence Feature Glyma17g02630

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1709672
stop:	1713278
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18650	AT	Annotation by Michelle Graham. TAIR10: CHY-type/CTCHY-type/RING-type Zinc finger protein \| chr5:6218260-6220374 FORWARD LENGTH=267	SoyBase	E_val: 1.00E-159	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1940	KOG	Zn-finger protein	JGI		ISS
PTHR21319	Panther	RING FINGER AND CHY ZINC FINGER DOMAIN CONTAINING 1	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
PF05495	PFAM	CHY zinc finger	JGI		ISS
UniRef100_G7ISH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger and CHY zinc finger domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ISH8_MEDTR	SoyBase	E_val: 2.00E-160	ISS
UniRef100_I1MRF0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRF0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02630

Paralog	Evidence	Comments
Glyma07g38070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g023400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g02630

Limit To All Plant Sequences

>Glyma17g02630.2   sequence type=transcript   gene model=Glyma17g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACGATGTTCCATTGAAACTAACAGATGTTCCATTAAAGTTGAATGATTAAGAAATTACTCCAATGTGTGTGAAATTGAGTGACTTGGTTTTGTAGATCTCTGGTATCCCAAGTGGGCGATCCTACAGCGATATTCTCTTCTCTCCTCCTATGCGCCTTATCTCATCCCAAGTGGTCATTCTCTTTTTCTCTATCACTGCTGCCTGCAAACAAAAGATATTTATATTGCATTAAAAAGATGAAAAAAAAGGGCAAGAGTGTGTGGTCCTTTTAAGTTGAACATGATGGAATGGCCGTCTTTCTCTTTTGGGTATCTTCCCAAATCAGGAAACACTTTCTCATCTTCCCTTTCCCAGTTTCACACCCTACCTCATGGAAGGCTCTGTCAACGAACGTCTTCATTTTGGGAAGATTGGATATGGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGAGGCCGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTATTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAGTTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGTTATGCAGTTGGTCTGCATGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGATGTCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACCTGGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACCGTCATGCCTCAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACCCGCACAGTTGCACCTCCAGTTCTTCCCCAATGACCAGATCTCTTGGGTTCAAGAAGGGAACACTGTCAGCAGAAAGTTAAAGTTAGCACCCTGTTATTACTATGGAGGGTTATTGAATTAATTGAGCATCAAAAGTGATTGGTGTATTGTGTCCTAGATAGTTTTCTTAGGTTATTCTTCCTCCAACATATGGAGTGGGATTGTTGTCTCTTGGTTATTTATTGGGCAGGTATAAACATCTTTATACTGTAATAGAGGGAAAACATTTTTCCCGTCATGAATTGCTGGTAATAGTGATGCATTGATACTTGATGATTGATTGCATTGTCGGCCATAGTGGTTTTCTATAATTTGGTTGATGTTATTTGATCCTTGTAGTCTGTCTCGCACATTGGGATAAACTGTGATTGTTAGTTTTGATCATTCTATTCTCAATTACAAATGTAGAAATAGTCGTCTTTTGAGGTTAAATTGGCCATTCCTTACACAGTTGAATGAATTGAAACTCATTATTATTTTTAATGAGTTCCTCTTTTTTTTAT

>Glyma17g02630.3   sequence type=transcript   gene model=Glyma17g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACGATGTTCCATTGAAACTAACAGATGTTCCATTAAAGTTGAATGATTAAGAAATTACTCCAATGTGTGTGAAATTGAGTGACTTGGTTTTGTAGATCTCTGGTATCCCAAGTGGGCGATCCTACAGCGATATTCTCTTCTCTCCTCCTATGCGCCTTATCTCATCCCAAGTGGTCATTCTCTTTTTCTCTATCACTGCTGCCTGCAAACAAAAGATATTTATATTGCATTAAAAAGATGAAAAAAAAGGGCAAGAGTGTGTGGTCCTTTTAAGTTGAACATGATGGAATGGCCGTCTTTCTCTTTTGGGTATCTTCCCAAATCAGGAAACACTTTCTCATCTTCCCTTTCCCAGTTTCACACCCTACCTCATGGAAGGCTCTGTCAACGAACGTCTTCATTTTGGGAAGATTGGATATGGATGCAATCATTACAGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGAGGCCGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTATTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAGTTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGTTATGCAGTTGGTCTGCATGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGATGTCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACCTGGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACCGTCATGCCTCAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACCCGCACAGTTGCACCTCCAGTTCTTCCCCAATGACCAGATCTCTTGGGTTCAAGAAGGGAACACTGTCAGCAGAAAGTTAAAGTTAGCACCCTGTTATTACTATGGAGGGTTATTGAATTAATTGAGCATCAAAAGTGATTGGTGTATTGTGTCCTAGATAGTTTTCTTAGGTTATTCTTCCTCCAACATATGGAGTGGGATTGTTGTCTCTTGGTTATTTATTGGGCAGGTATAAACATCTTTATACTGTAATAGAGGGAAAACATTTTTCCCGTCATGAATTGCTGGTAATAGTGATGCATTGATACTTGATGATTGATTGCATTGTCGGCCATAGTGGTTTTCTATAATTTGGTTGATGTTATTTGATCCTTGTAGTCTGTCTCGCACATTGGGATAAACTGTGATTGTTAGTTTTGATCATTCTATTCTCAATTACAAATGTAGAAATAGTCGTCTTTTGAGGTTAAATTGGCCATTCCTTACACAGTTGAATGAATTGAAACTCATTATTATTTTTAATGAGTTCCTCTTTTTTTTAT

Coding sequences of Glyma17g02630

Limit To All Plant Sequences

>Glyma17g02630.1   sequence type=CDS   gene model=Glyma17g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAATGGCCGTCTTTCTCTTTTGGGTATCTTCCCAAATCAGGAAACACTTTCTCATCTTCCCTTTCCCAGTTTCACACCCTACCTCATGGAAGGCTCTGTCAACGAACGTCTTCATTTTGGGAAGATTGGATATGGGTATTCTCTTTTTCTTTGGTCTTTCCATTCATTTCCATATCTTCACTCTTTTGTTTTGATGACAGATGCAATCATTACAGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGAGGCCGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTATTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAGTTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGTTATGCAGTTGGTCTGCATGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGATGTCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACCTGGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACCGTCATGCCTCAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACCCGCACAGTTGCACCTCCAGTTCTTCCCCAATGA

>Glyma17g02630.2   sequence type=CDS   gene model=Glyma17g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGCTCTGTCAACGAACGTCTTCATTTTGGGAAGATTGGATATGGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGAGGCCGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTATTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAGTTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGTTATGCAGTTGGTCTGCATGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGATGTCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACCTGGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACCGTCATGCCTCAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACCCGCACAGTTGCACCTCCAGTTCTTCCCCAATGA

>Glyma17g02630.3   sequence type=CDS   gene model=Glyma17g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGCTCTGTCAACGAACGTCTTCATTTTGGGAAGATTGGATATGGATGCAATCATTACAGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGAGGCCGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTATTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAGTTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGTTATGCAGTTGGTCTGCATGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGATGTCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACCTGGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACCGTCATGCCTCAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACCCGCACAGTTGCACCTCCAGTTCTTCCCCAATGA

Predicted protein sequences of Glyma17g02630

Limit To All Plant Sequences

>Glyma17g02630.1   sequence type=predicted peptide   gene model=Glyma17g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEWPSFSFGYLPKSGNTFSSSLSQFHTLPHGRLCQRTSSFWEDWIWVFSFSLVFPFISISSLFCFDDRCNHYRRRCRIRAPCCNEIYSCRHCHNEAASLLKNPFDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDVEKEQFHCDDCGICRVGGRDNFFHCKKCGSCYAVGLHDNHLCVENSMRHHCPICYEYLFDSLKDVIVMKCGHTMHHECYLEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPQDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRTVAPPVLPQ*

>Glyma17g02630.2   sequence type=predicted peptide   gene model=Glyma17g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSVNERLHFGKIGYGRRCRIRAPCCNEIYSCRHCHNEAASLLKNPFDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDVEKEQFHCDDCGICRVGGRDNFFHCKKCGSCYAVGLHDNHLCVENSMRHHCPICYEYLFDSLKDVIVMKCGHTMHHECYLEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPQDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRTVAPPVLPQ*

>Glyma17g02630.3   sequence type=predicted peptide   gene model=Glyma17g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSVNERLHFGKIGYGCNHYRRRCRIRAPCCNEIYSCRHCHNEAASLLKNPFDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDVEKEQFHCDDCGICRVGGRDNFFHCKKCGSCYAVGLHDNHLCVENSMRHHCPICYEYLFDSLKDVIVMKCGHTMHHECYLEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPQDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRTVAPPVLPQ*

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