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Report for Sequence Feature Glyma17g02610

Feature Type:gene_model
Chromosome:Gm17
Start:1695425
stop:1698332
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g02610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15630AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr4:8917527-8918683 FORWARD LENGTH=190 SoyBaseE_val: 3.00E-51ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043424GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF58Panther INTEGRAL MEMBRANE FAMILY PROTEIN JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_C6SZP8UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein 5 n=1 Tax=Glycine max RepID=CSPL5_SOYBN SoyBaseE_val: 6.00E-130ISS
UniRef100_C6SZP8UniRef Annotation by Michelle Graham. Best UniRef hit: CASP-like protein 5 n=1 Tax=Glycine max RepID=CSPL5_SOYBN SoyBaseE_val: 6.00E-130ISS

Expression Patterns of Glyma17g02610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02610
ParalogEvidenceComments
Glyma07g38090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g023100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g02610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g02610
>Glyma17g02610.1   sequence type=CDS   gene model=Glyma17g02610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGGGTTGAGAGCAAAGAAAGAGAAGTGATGGTGGCAAAACCAGTTGCAGTGGGTGTCAGTGATTTGCTTCTGAGGCTGTTGGCCTTCACAGTCACTCTTGTCGCTGCTATAGTCATTGCGGTCGATAAGCAGACCAAGGTTGTTCCCATTCAGCTTTCAGATTCCTTACCACCTTTGGATGTTCCTCTCACTGCTAAGTGGCATCAAATGTCTGCCATTGTGTACTTTCTGGTGACCAATGCAATAGCATGCACGTATGCAGTCCTGTCTCTACTCCTTGCCCTCGTGAATAGAGGTAAAAGCAAAGGCTTGTGGACATTGATCGCTGTCCTCGACGCATTCATGGTGGCTTTGCTCTTTTCCGGCAACGGAGCCGCCGCGGCAGTTGGTGTCCTTGGCTACAAAGGAAACTCTCATGTGAATTGGAACAAGGTGTGCAATGTCTTTGGGAAATTTTGTGATCAAATGGCTGCTTCAATTGGTGTGTCACTGATTGGATCATTAGCATTCCTCTTGCTCGTGATTATTCCTGGGGTGAGGCTTCATCGGAGAAATTAG
Predicted protein sequences of Glyma17g02610
>Glyma17g02610.1   sequence type=predicted peptide   gene model=Glyma17g02610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGVESKEREVMVAKPVAVGVSDLLLRLLAFTVTLVAAIVIAVDKQTKVVPIQLSDSLPPLDVPLTAKWHQMSAIVYFLVTNAIACTYAVLSLLLALVNRGKSKGLWTLIAVLDAFMVALLFSGNGAAAAVGVLGYKGNSHVNWNKVCNVFGKFCDQMAASIGVSLIGSLAFLLLVIIPGVRLHRRN*






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