Glyma17g02600 - SoyBase

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Report for Sequence Feature Glyma17g02600

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1686335
stop:	1689041
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06390	AT	Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) \| chr3:1938913-1939707 REVERSE LENGTH=199	SoyBase	E_val: 8.00E-47	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR11615	Panther	NITRATE, FROMATE, IRON DEHYDROGENASE	JGI		ISS
PTHR11615:SF55	Panther	OS07G0442900 PROTEIN	JGI		ISS
PF04535	PFAM	Domain of unknown function (DUF588)	JGI		ISS
UniRef100_C6SXZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein 8 n=1 Tax=Glycine max RepID=CSPL8_SOYBN	SoyBase	E_val: 2.00E-133	ISS
UniRef100_I1MRE7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRE7_SOYBN	SoyBase	E_val: 7.00E-135	ISS

Expression Patterns of Glyma17g02600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02600

Paralog	Evidence	Comments
Glyma07g38110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g023000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g02600

Limit To All Plant Sequences

>Glyma17g02600.2   sequence type=transcript   gene model=Glyma17g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCTGTGGCTCCATATAAATATAATAAACACACTATCCGAATCTAAGATTACAATTACCAAGTTATTTAGCTGGCAACCAAATATATATTTCGTTTGAAATGTAAGCCTTGAAATCAAGCATGTCAAATATATATTCTGATATATTAATTTTCCATGTAAACCTTGAGACTTGAGATTACGCATATCAAATATTCTAACAGACTATTAGCTGTATATATGTATGAGGCTCATCACATTCACGTCCACACCAACTAACAAGCAACTGTTCAAACCAACCATATAATATAACGTGCAGGAAACTCCAACTCATTTGTTTTTACACCTCTCTGGTTCCATTGGCTTTCCCCCCAAGTCCATATCCATCTATATATATTTGCAGAATATCATTGTTTTGTTCAACTATCCTTATCTGTTATATCTCACCACTAAGTTTATTATTATCAAAACCAAAAGCTAGCAAGCTACCTTGCAAAGCAACACATGGCTTCTACAGACAAGCATGGCGACACTGAATACAGAACATCATCTTCAACTCCAGCTCCTGCGGGTGTTGATTACTTTAAATTTGATGTTATCCTAAGGTTTGTGTTATTTGCAGCATCACTGGTAGCTGTTGTGGTGATCGTCACTGGTAATCAAACAGAGGTTATTCTTGTGCCACAGCCTGTGCCATGGCCAGCCAAGTTCAGATACACACCAGCCTTTGTGTATTTTGTAGCTGCATTGTCCGTTACTGGCCTCTACAGTATCATTACAACACTTGCATCACTCTTTGCCAGTAACAAGCCAGCCCTCAAAACCAAGTTGCTCCTCTACTTTATCTTATGGGATGCGGTAATTAATCCAATAAACCGTTTTTTTCACCTTGCTATTCATCTTCTCTTCTCAAACTAACTTGCTTTAATTTATATATATCAACATGAAAGCATAACAAATGAATAAATTAGCATGATGACTCTTTTGCAGCTGATATTGGGGATAATAGCCTCAGCAACAGGCACAGCTGGGGGTGTAGCATATTTGGGTTTGAAGGGAAACAGCCATGTGGTGGGTTGGAATAAAATTTGCCATGTTTACGATAAGTTCTGTAGGCATGTTGGTGCCTCCATAGCAGTGGCTTTGTTTGGAAGCATTGTCACAGTCTTGCTCATTTGGCTTTCAGCATACAGCATTCATAGCCGAGTCCCCAAGTAGATGGAAGGAACATGGATCATGCATTCACACATCTTCATTTATTGTTTATAAAGTTAGCGTGCTCAGTAATTCAGTAATTGTTAAGAGTGTGTAGATGGTTTAATGTATTGCTTCAGTTGTGTTGATTATTTTTTGTAAATCAGTGTTTTCCCCTCCAAGTACCTCAGTTGTATTTTACTACATGACATTCGTGACATAAATTGAAATTTTTAATTATATATGTTCCCACAAAAATAATAT

Coding sequences of Glyma17g02600

Limit To All Plant Sequences

>Glyma17g02600.1   sequence type=CDS   gene model=Glyma17g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTACAGACAAGCATGGCGACACTGAATACAGAACATCATCTTCAACTCCAGCTCCTGCGGGTGTTGATTACTTTAAATTTGATGTTATCCTAAGGTTTGTGTTATTTGCAGCATCACTGGTAGCTGTTGTGGTGATCGTCACTGGTAATCAAACAGAGGTTATTCTTGTGCCACAGCCTGTGCCATGGCCAGCCAAGTTCAGATACACACCAGCCTTTGTGTATTTTGTAGCTGCATTGTCCGTTACTGGCCTCTACAGTATCATTACAACACTTGCATCACTCTTTGCCAGTAACAAGCCAGCCCTCAAAACCAAGTTGCTCCTCTACTTTATCTTATGGGATGCGCTGATATTGGGGATAATAGCCTCAGCAACAGGCACAGCTGGGGGTGTAGCATATTTGGGTTTGAAGGGAAACAGCCATGTGGTGGGTTGGAATAAAATTTGCCATGTTTACGATAAGTTCTGTAGGCATGTTGGTGCCTCCATAGCAGTGGCTTTGTTTGGAAGCATTGTCACAGTCTTGCTCATTTGGCTTTCAGCATACAGCATTCATAGCCGAGTCCCCAAGTAG

>Glyma17g02600.2   sequence type=CDS   gene model=Glyma17g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTACAGACAAGCATGGCGACACTGAATACAGAACATCATCTTCAACTCCAGCTCCTGCGGGTGTTGATTACTTTAAATTTGATGTTATCCTAAGGTTTGTGTTATTTGCAGCATCACTGGTAGCTGTTGTGGTGATCGTCACTGGTAATCAAACAGAGGTTATTCTTGTGCCACAGCCTGTGCCATGGCCAGCCAAGTTCAGATACACACCAGCCTTTGTGTATTTTGTAGCTGCATTGTCCGTTACTGGCCTCTACAGTATCATTACAACACTTGCATCACTCTTTGCCAGTAACAAGCCAGCCCTCAAAACCAAGTTGCTCCTCTACTTTATCTTATGGGATGCGGTAATTAATCCAATAAACCGTTTTTTTCACCTTGCTATTCATCTTCTCTTCTCAAACTAA

Predicted protein sequences of Glyma17g02600

Limit To All Plant Sequences

>Glyma17g02600.1   sequence type=predicted peptide   gene model=Glyma17g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTDKHGDTEYRTSSSTPAPAGVDYFKFDVILRFVLFAASLVAVVVIVTGNQTEVILVPQPVPWPAKFRYTPAFVYFVAALSVTGLYSIITTLASLFASNKPALKTKLLLYFILWDALILGIIASATGTAGGVAYLGLKGNSHVVGWNKICHVYDKFCRHVGASIAVALFGSIVTVLLIWLSAYSIHSRVPK*

>Glyma17g02600.2   sequence type=predicted peptide   gene model=Glyma17g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTDKHGDTEYRTSSSTPAPAGVDYFKFDVILRFVLFAASLVAVVVIVTGNQTEVILVPQPVPWPAKFRYTPAFVYFVAALSVTGLYSIITTLASLFASNKPALKTKLLLYFILWDAVINPINRFFHLAIHLLFSN*

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