Glyma17g02560 - SoyBase

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Report for Sequence Feature Glyma17g02560

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1650841
stop:	1655266
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05030	AT	Annotation by Michelle Graham. TAIR10: sodium hydrogen exchanger 2 \| chr3:1393456-1396784 REVERSE LENGTH=546	SoyBase	E_val: 0	ISS
GO:0006814	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transport	SoyBase	N/A	ISS
GO:0010107	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion import	SoyBase	N/A	ISS
GO:0010351	GO-bp	Annotation by Michelle Graham. GO Biological Process: lithium ion transport	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0055075	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion homeostasis	SoyBase	N/A	ISS
GO:0090333	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal closure	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0015081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sodium ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity	SoyBase	N/A	ISS
GO:0015386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium:hydrogen antiporter activity	SoyBase	N/A	ISS
KOG1965	KOG	Sodium/hydrogen exchanger protein	JGI		ISS
PTHR10110	Panther	SODIUM/HYDROGEN EXCHANGER	JGI		ISS
PTHR10110:SF20	Panther	SODIUM/HYDROGEN EXCHANGER	JGI		ISS
PF00999	PFAM	Sodium/hydrogen exchanger family	JGI		ISS
UniRef100_I1MRD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sodium/hydrogen exchanger (Fragment) n=1 Tax=Glycine max RepID=I1MRD9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F0B5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F0B5 related cluster n=1 Tax=unknown RepID=UPI000233F0B5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02560

Paralog	Evidence	Comments
Glyma07g38160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g022500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02560

Limit To All Plant Sequences

>Glyma17g02560.1   sequence type=CDS   gene model=Glyma17g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGGAAGCATTGTATTTGTATGATAAACTAACCACAGTCATGACCTCTGATCATGCTTCCGTCGTCTCAATGAACCTTTTTGTTGCTCTTCTCTGCGCTTGCATCATCATCGGTCATTTGTTGGAGGAGAACCGATGGATCAATGAATCCATCACTGCCCTTCTCATTGGTCTCTGTACTGGGGTCTTTATATTGTTTACTACTGGAGGAAAAAGCTCTCATATACTTGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTCTTCCACCCATCATCTTCAATGCCGGGTTTCAGGTGAAGAAGAAACAATTTTTCCGCAATTTTATGACTATAATGCTCTTTGGTGCAGTTGGTACTTTGATATCATTCTGCATAATATCACTAGGTGCCATACACTTTTTTCAGAAATTGGACATTGGTTCCCTGAAGATTGGAGATTTTCTAGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAGGTTCTTAATCAGGATGAGACTCCCTTACTATATAGCCTGGTCTTTGGGGAGGGGGTAGTAAATGATGCTACCTCCGTAGTTCTCTTCAAAGCAATTCAGAATTTTGACCTTTCTCACATTGACTTAACCACTGCCTTGCAATTATTAGGGAATTTTTTGTATTTATTCATTGCAAGCACTGTGTTGGGAATCTTTGCTGGATTGCTCAGTGCATTCATTATTAAGAAGCTCTATTTTGGCAAGTTGATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAACTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAGCATGTTTTTGCCACTTTGTCATTCATTGCTGAAATCTTTATCTTCCTCTATGTGGGGATGGATGCATTAGATATAGAAAAGTGGCGAATTGTAAGTCAAAGCCCAAGAAAATCAATTGGGGTCAGTTCGTTGCTGTTGGCACTTATCTTAGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGCTTAAGAAGTCTCAATCTGAGAAAATTGAGTTAAAACAACAAGTAACAATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTCTCTATCGCACTTGCTTACAATCAGTTTACCAGGCTGGGCCATACTAAACTGCGGGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGGCGTTTGGGTTGATGACAAAGCCACTTGTGAGACTATTGCTTCCTTGGTCTAAACACGTAATGAGCTTGCCGTCCCCACCATCGACACCAAAATCATTCACTGTGCCACTTCTTGGCAGTCAAAATGGGCCTCCACCAAGCACCTTGAGGATGCTCCTAAGCTGCATTCCTACTCGTGGAGTTCACCACTATTGGCGCAAGTTTGATGATTCTGTAATGCGACCCGTCTTTGGTGGACGAGGTTTTGTACCCTACGTTCCCGGGTCACCCCTTGAACAAAGTGTTCATCAGTGGCATTGCACTTAA

Predicted protein sequences of Glyma17g02560

Limit To All Plant Sequences

>Glyma17g02560.1   sequence type=predicted peptide   gene model=Glyma17g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVEALYLYDKLTTVMTSDHASVVSMNLFVALLCACIIIGHLLEENRWINESITALLIGLCTGVFILFTTGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFCIISLGAIHFFQKLDIGSLKIGDFLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLTTALQLLGNFLYLFIASTVLGIFAGLLSAFIIKKLYFGKLIRHSTDREVALMVLMAYLSYMLSELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHVFATLSFIAEIFIFLYVGMDALDIEKWRIVSQSPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLLKKSQSEKIELKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTLAFGLMTKPLVRLLLPWSKHVMSLPSPPSTPKSFTVPLLGSQNGPPPSTLRMLLSCIPTRGVHHYWRKFDDSVMRPVFGGRGFVPYVPGSPLEQSVHQWHCT*

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