SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08820 | AT | Annotation by Michelle Graham. TAIR10: vamp/synaptobrevin-associated protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386 | SoyBase | E_val: 1.00E-57 | ISS |
| GO:0046907 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular transport | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| KOG0439 | KOG | VAMP-associated protein involved in inositol metabolism | JGI | ISS | |
| PTHR10809 | Panther | VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP) | JGI | ISS | |
| PTHR10809:SF6 | Panther | VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PRO | JGI | ISS | |
| PF00635 | PFAM | MSP (Major sperm protein) domain | JGI | ISS | |
| UniRef100_C6THF6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6THF6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JJ25 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vesicle-associated membrane protein-associated protein SCS2 n=1 Tax=Medicago truncatula RepID=G7JJ25_MEDTR | SoyBase | E_val: 2.00E-164 | ISS |
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Glyma17g02550 not represented in the dataset |
Glyma17g02550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g38170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g022400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g02550.2 sequence type=transcript gene model=Glyma17g02550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAATCAGGAGGAGTATAACGATGATAAATTTGTTAGATGGTTAACATTTAGAGGGATGATAAGCATGGTATGAAAGAAAAAATGACGTGTGAGGATGGATATAAGAATTAAGAAAGGGGAAAGGAGCAGAGTGTGAGTGTGTGGCCCACTTGCGTAACCGACGACGCCAACCATCCCATTCCAAAGTAACAACTCAACGACACTTGTTTCTTCCCTTCTCATTCTCTTTCTCTACATTTCATTCATTCTTCTCCAATTAGGGCTTTGCATTTTGCATTTCACTTTCTCATTTTCCCATGGCTACTCACCTTCTTCATATCGAACCCGCCGAGCTCCGGTTCGTCTTTGAATTGAAGAAACAAAGTTCATGTTTGGTTCAACTTGCCAACAACACTGATCACTTTCTTGCCTTTAAGGTAAAAACAACTTCACCCAAAAAATATTGCGTCAGGCCCAACATAGGCATCATCAAGCCCAATGATAAATGTGATTTTACTGGTATTTTTCCGTTACTGCATTCAATTAAACATTTTAACGCACACATATATATATGCATGCACTTTCTACATTTTTAGTGTCCTTTTATATGTGTGTGTTGGATGCAGTTACTATGCAAGCTCAGCGCATGGCACCGCCTGATATGCTGTGTAAAGACAAATTTCTTATTCAGAGCACAGTTGTCCCGGTTGGAACCACAGAAGATGACATCACCTCTGATATGTTTGCAAAAGACAGTGGAAAGTTTATTGAGGAGAAGAAACTACGGGTAGTCCTCATCAGTCCACCATCTTCTCCGGTGTTGCTTCCAGTAAATGGTGATATGAAGCATGATCCATCCAACGAAATTAATGTGCAAAAAGATAGGTTGCCCAGTGGAGTTGAAAACATACCTCCCCCTCGTAAAGTTTCCGAGGAGGTTAAAGGTTTGGAACCAGCCCAGGATATGAAGGAGGATAGAGCAGATGAGGATATTGTCCCAAGACAAGCTGAGAATGTTGGTGACATGAAGCCAGCAAAAGATGATGTGCAGTCGAATTTAGCCAATGAATCTGAGGAATTGAAGTCAAAACTTAGTGTAATGGATTCAAAGCTAAGAGAGGCTGAGGTAACCATCACGAAGCTGAATGAGGAGAGGCGCAGGAACACTCAAGAAAAAGATTTGCTTAAGAAAGAGTTGGAGGTGTTGAAGAGGCAAATCAATACGAAAGGAAATCAGGCTGGTTTTCCATTTCTGTTTGTTTGCATGGTTGCTCTTATCAGTGTGGCAGTTGGATATTATATTCATCCATAAGGGAGATAACTGCGTGTATAGGATAGCTGATGGCAGACGTTCTAAAATCATGGGTTTCTCCGTAATGACTAGATAGAGGATGGTTCATTTGTTTATTGTGATGGTTTTACTGGACAGATGTTAATATGTGATGTGGGAAGCTATGGAATTGCATGTGAAGTGAACTAAGCCTTTCAATAGAAGTATCACAAGCAGCATTCTGATTCTGATAAGCCTTTCAAAATCATTGGCCTGTTCATTAACTTTTTTAGAAATGTTTCCTTTAGAATCCGCCTGAGAGAGACACATCAGTGGAAGAATATTCTTCCAAATACCTTTCTGAATTTCTAGTTTCTGTTTCTATTAAAGGAAATCACACGTAAGACGTTGCAA
>Glyma17g02550.1 sequence type=CDS gene model=Glyma17g02550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACTCACCTTCTTCATATCGAACCCGCCGAGCTCCGGTTCGTCTTTGAATTGAAGAAACAAAGTTCATGTTTGGTTCAACTTGCCAACAACACTGATCACTTTCTTGCCTTTAAGGTAAAAACAACTTCACCCAAAAAATATTGCGTCAGGCCCAACATAGGCATCATCAAGCCCAATGATAAATGTGATTTTACTGTTACTATGCAAGCTCAGCGCATGGCACCGCCTGATATGCTGTGTAAAGACAAATTTCTTATTCAGAGCACAGTTGTCCCGGTTGGAACCACAGAAGATGACATCACCTCTGATATGTTTGCAAAAGACAGTGGAAAGTTTATTGAGGAGAAGAAACTACGGGTAGTCCTCATCAGTCCACCATCTTCTCCGGTGTTGCTTCCAGTAAATGGTGATATGAAGCATGATCCATCCAACGAAATTAATGTGCAAAAAGATAGGTTGCCCAGTGGAGTTGAAAACATACCTCCCCCTCGTAAAGTTTCCGAGGAGGTTAAAGGTTTGGAACCAGCCCAGGATATGAAGGAGGATAGAGCAGATGAGGATATTGTCCCAAGACAAGCTGAGAATGTTGGTGACATGAAGCCAGCAAAAGATGATGTGCAGTCGAATTTAGCCAATGAATCTGAGGAATTGAAGTCAAAACTTAGTGTAATGGATTCAAAGCTAAGAGAGGCTGAGGTAACCATCACGAAGCTGAATGAGGAGAGGCGCAGGAACACTCAAGAAAAAGATTTGCTTAAGAAAGAGTTGGAGGTGTTGAAGAGGCAAATCAATACGAAAGGAAATCAGGCTGGTTTTCCATTTCTGTTTGTTTGCATGGTTGCTCTTATCAGTGTGGCAGTTGGATATTATATTCATCCATAA >Glyma17g02550.2 sequence type=CDS gene model=Glyma17g02550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATGCACTTTCTACATTTTTAGTGTCCTTTTATATGTGTGTGTTGGATGCAGTTACTATGCAAGCTCAGCGCATGGCACCGCCTGATATGCTGTGTAAAGACAAATTTCTTATTCAGAGCACAGTTGTCCCGGTTGGAACCACAGAAGATGACATCACCTCTGATATGTTTGCAAAAGACAGTGGAAAGTTTATTGAGGAGAAGAAACTACGGGTAGTCCTCATCAGTCCACCATCTTCTCCGGTGTTGCTTCCAGTAAATGGTGATATGAAGCATGATCCATCCAACGAAATTAATGTGCAAAAAGATAGGTTGCCCAGTGGAGTTGAAAACATACCTCCCCCTCGTAAAGTTTCCGAGGAGGTTAAAGGTTTGGAACCAGCCCAGGATATGAAGGAGGATAGAGCAGATGAGGATATTGTCCCAAGACAAGCTGAGAATGTTGGTGACATGAAGCCAGCAAAAGATGATGTGCAGTCGAATTTAGCCAATGAATCTGAGGAATTGAAGTCAAAACTTAGTGTAATGGATTCAAAGCTAAGAGAGGCTGAGGTAACCATCACGAAGCTGAATGAGGAGAGGCGCAGGAACACTCAAGAAAAAGATTTGCTTAAGAAAGAGTTGGAGGTGTTGAAGAGGCAAATCAATACGAAAGGAAATCAGGCTGGTTTTCCATTTCTGTTTGTTTGCATGGTTGCTCTTATCAGTGTGGCAGTTGGATATTATATTCATCCATAA
>Glyma17g02550.1 sequence type=predicted peptide gene model=Glyma17g02550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATHLLHIEPAELRFVFELKKQSSCLVQLANNTDHFLAFKVKTTSPKKYCVRPNIGIIKPNDKCDFTVTMQAQRMAPPDMLCKDKFLIQSTVVPVGTTEDDITSDMFAKDSGKFIEEKKLRVVLISPPSSPVLLPVNGDMKHDPSNEINVQKDRLPSGVENIPPPRKVSEEVKGLEPAQDMKEDRADEDIVPRQAENVGDMKPAKDDVQSNLANESEELKSKLSVMDSKLREAEVTITKLNEERRRNTQEKDLLKKELEVLKRQINTKGNQAGFPFLFVCMVALISVAVGYYIHP* >Glyma17g02550.2 sequence type=predicted peptide gene model=Glyma17g02550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHALSTFLVSFYMCVLDAVTMQAQRMAPPDMLCKDKFLIQSTVVPVGTTEDDITSDMFAKDSGKFIEEKKLRVVLISPPSSPVLLPVNGDMKHDPSNEINVQKDRLPSGVENIPPPRKVSEEVKGLEPAQDMKEDRADEDIVPRQAENVGDMKPAKDDVQSNLANESEELKSKLSVMDSKLREAEVTITKLNEERRRNTQEKDLLKKELEVLKRQINTKGNQAGFPFLFVCMVALISVAVGYYIHP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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