Report for Sequence Feature Glyma17g02510
Feature Type: gene_model
Chromosome: Gm17
Start: 1607895
stop: 1609996
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g02510
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18670 AT
Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein | chr3:6424135-6426471 REVERSE LENGTH=598
SoyBase E_val: 5.00E-39 ISS
UniRef100_G7IFK1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A n=1 Tax=Medicago truncatula RepID=G7IFK1_MEDTR
SoyBase E_val: 5.00E-163 ISS
UniRef100_I1MRD3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MRD3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g02510
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g02510
Paralog Evidence Comments
Glyma07g38223 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g02510 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g022100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g02510
Coding sequences of Glyma17g02510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g02510.2 sequence type=CDS gene model=Glyma17g02510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGGTTTGCTTGTTGATGAGTGGAAGGAAGAAACAGAGGACCTAAGTAGTAATAGAGAAGATACACATTTTAACTATCCAATGAACTACAGAACATGCTTCAGCTTCTTAAATTTGTTGAAGAATGCTGTTAAAGTTATGACAATAGGTACAAAACATAGTAAAGCTGGAACTGATGATGAAGAGAATCTCCCAAAATCATCCCACACCAACTATGGACCATCTTGGATAGGCAAAATCCAACGAAGGAAGGAGAAACACATGTGGGCTAAGCTAGTGATGGATGAATTGATTGAGAGAGCTTCTTTGTACAAGTATGACTATACTGGGAAAAACTCCTTTGTTTTTGAGCATGACAATGATATGGAAAACAAAGATAGTCACATGAACAAAAAAGCCATAGAGAAAAAGAGAATGAATAAAATGGTGGAGAAGATGCTAGATACCTTCCCAGTGGCCATCCATGATGTTGATTCTGACAACAAGAATGTTGTTCTTTTGGCAATAGAGAACAGGCAGCCTCGTGTCTACAAGCTGCTCACAAAGAGGAATTTGGTAAAGGAAAGTGCATTTCGTCATATAGATAATCAAGGTAACAGTGCATTGCACCTTGCTGCCATGTATAGGGAACATAGGCCTTGGCGTGTCCCTGGTGCTGCCATGCAAATGCAGTGGGAATATAAGTGGTACAAGCTTGTTAAGAATTCCATGGCACCAAATTTCTATGCACGTTACAACAAGGGACAAACAGCTAAACAGGTTTTCATCATCACTCAAGAACCACTGGTGAGAGAGGGAAGGAAATGGCTGTCCAAGACCTCAGAGTCATGCTCACTAGTAGCAGCACTTGTTGAAACGGTTGCATTCACAAACTCAGCAGCAATACCAGGTGGTGCCAATGAGGTAACTGGTGTGCCAGTGTTGAGTGAACAACCTGCTTTCAAAGTCTTTGCTGTGGCATCACTTGTGGCACTTTGCTCCTCAGTGACAGCCCTTGTTTTGTTTCTTTCAATACTCACATCAAGGTTCCAAGAAAAGGACTTACAAAAGAAGCTTCTCATGGGAATGACTTCACTCTGGACATCTATAGCATCAGTGTTGGTCTCATTTTTTTATCTCATATGTGCCGTGACATGTTTGCCAGTGTCATTTTTTGTGTTGGTTCAACTCCCTCTTTACTTGGATCTCATGTTGGCTATATTTCGGAAGGTTCCTCGACACGTTTATAAGGTCTTCTCCCATTAG
Predicted protein sequences of Glyma17g02510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g02510.2 sequence type=predicted peptide gene model=Glyma17g02510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGLLVDEWKEETEDLSSNREDTHFNYPMNYRTCFSFLNLLKNAVKVMTIGTKHSKAGTDDEENLPKSSHTNYGPSWIGKIQRRKEKHMWAKLVMDELIERASLYKYDYTGKNSFVFEHDNDMENKDSHMNKKAIEKKRMNKMVEKMLDTFPVAIHDVDSDNKNVVLLAIENRQPRVYKLLTKRNLVKESAFRHIDNQGNSALHLAAMYREHRPWRVPGAAMQMQWEYKWYKLVKNSMAPNFYARYNKGQTAKQVFIITQEPLVREGRKWLSKTSESCSLVAALVETVAFTNSAAIPGGANEVTGVPVLSEQPAFKVFAVASLVALCSSVTALVLFLSILTSRFQEKDLQKKLLMGMTSLWTSIASVLVSFFYLICAVTCLPVSFFVLVQLPLYLDLMLAIFRKVPRHVYKVFSH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
